View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_18 (Length: 474)
Name: NF16735_low_18
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 130 - 455
Target Start/End: Complemental strand, 37060723 - 37060398
Alignment:
| Q |
130 |
acagtacagtacagatgttttgggaactttgggattagtttttggacttttgtagtattatttgttgaaaagtttccggagctgtgttaataaaaagtta |
229 |
Q |
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| T |
37060723 |
acagtacagtacagatgttttgggaactttgggattagtttttggacttttgtagtattatttgttgaaaagtttccggagctgtgttaataaaaagtta |
37060624 |
T |
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| Q |
230 |
actcatctataaaatcggagatctccttaatggatgaatagttaacactggttgagtcttaacacctgcattgactcttgtgatctcagttctcagagtt |
329 |
Q |
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| T |
37060623 |
actcatctataaaatcggagatctccttaatggatgaatagttaacactggttgagtcttaacacctgcattgactcttgtgatctcagttctcagagtt |
37060524 |
T |
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| Q |
330 |
caatctaacaaaagaaatgaagggtttactattgatggtgtgtgtcggttatgaaagcaattccaagggagttcattgctcatgcattgtgactgacaga |
429 |
Q |
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| T |
37060523 |
caatctaacaaaagaaatgaagggtttactattgatggtgtgtgtcggttatgaaagcaattccaagggagttcattgctcatgcattgtgactgacaga |
37060424 |
T |
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| Q |
430 |
gtagcgtgaggatggtgggtcccatt |
455 |
Q |
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| T |
37060423 |
gtagcgtgaggatggtgggtcccatt |
37060398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37060818 - 37060731
Alignment:
| Q |
1 |
gaaaagtagaacttgtagaagaagaagagccacaaaggttgccattcgtgagtgtgtttggaagcagaagtgatgagaaaacttttgg |
88 |
Q |
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| T |
37060818 |
gaaaagtagaacttgtagaagaagaagagccacaaaggttgccattcgtgagtgtgtttggaagcagaagtgatgagaaaacttttgg |
37060731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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