View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_2 (Length: 703)
Name: NF16735_low_2
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 244 - 490
Target Start/End: Complemental strand, 1176709 - 1176463
Alignment:
| Q |
244 |
ctagtgtataaaattctactgcactaccatctatggtctaaaatacatgtggtaatttttactctaaaatttgattgaaaatacttttatcaggnnnnnn |
343 |
Q |
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| T |
1176709 |
ctagtgtataaaattctactgcactaccatctatggtctaaaatacatgtggtaatttttactccaaaatttgattgaaaatacttttatcaggtttttt |
1176610 |
T |
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| Q |
344 |
naggtgaaaatgggggatgtgacatggatggaaatgaattgccacgtttggtgtatgtttctagagaaaagaggcctaacttcaatcaccnnnnnnnngc |
443 |
Q |
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| T |
1176609 |
taggtgaaaatgggggatgtgacatggatggaaatgaattgccacgtttggtgtatgtttctagagaaaagaggcctaacttcaatcaccaaaaaaaagc |
1176510 |
T |
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| Q |
444 |
aggagctctaaatgcactggtaagcaatacctatgaatgagtatgcg |
490 |
Q |
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| T |
1176509 |
aggagctctaaatgcactggtaagcaatacctatgaatgagtatgcg |
1176463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 1176934 - 1176772
Alignment:
| Q |
11 |
gcaaaggctaagaaggttccagaagaagggtggacaatgcaagatggaatgttatggcctggaaataatattcgtgatcatccaggaatgatacaggtta |
110 |
Q |
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| T |
1176934 |
gcaaaggctaagaaggttccagaagaagggtggacaatgcaagatggaatgttatggcctggaaataatattcgtgatcatccaggaatgatacaggtta |
1176835 |
T |
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| Q |
111 |
gtgatagagcagatttaaatacatttttagtctctctattttgctttatttatatatcacttt |
173 |
Q |
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| T |
1176834 |
gtgatagagcagatttaaatacatttttagtctctctattttgctttatttatatatcacttt |
1176772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 547 - 690
Target Start/End: Complemental strand, 1176406 - 1176263
Alignment:
| Q |
547 |
ccgtccgacttcaattaaaccgcctctgatgcattgattgcaaaatttccttactgtatggaatctgaatccctttttgtttaactgttggcaattctat |
646 |
Q |
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| T |
1176406 |
ccgtccgacttcaattaaaccgcctctgatgcattgattacaaaatttccttactgtatggaatctgaatccctttttgtttaactgttggtaattctat |
1176307 |
T |
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| Q |
647 |
gaaacaggttagagtgtcttctgtactttccaatgcaccttttg |
690 |
Q |
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| T |
1176306 |
gaaacaggttagagtgtcttctgtgctttccaatgcaccttttg |
1176263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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