View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_21 (Length: 445)
Name: NF16735_low_21
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 9624834 - 9625021
Alignment:
| Q |
11 |
agattatactgatgatgatgaagtagatgaaacaacattgacaacaaatgaagaattagcaaatacagaagaactaaacagaaaatttgaagaattcata |
110 |
Q |
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| T |
9624834 |
agattatgctgatgatgatgaagtagatgaaacaacattgacaacaaatgaagaattagcaaatacagaagaactaaacagaaaatttgaagaattcata |
9624933 |
T |
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| Q |
111 |
aggaaaatgaaagaggagatgaggattgaagctcaaacacacctcattgcagtttaacaaccttcttctaattaagtactttagtctc |
198 |
Q |
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| T |
9624934 |
aggaaaatgaaagaggagatgaggattgaagctcaaacacaccttattgcagtttaacaaccttcttctaattaagtgctttagtctc |
9625021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 270 - 431
Target Start/End: Original strand, 9625094 - 9625250
Alignment:
| Q |
270 |
agatatattacataaccttctagcatcttctttcctttttagtcttttaaattatgtcatgttattttaaaattagtattatatgcaatatagagttaag |
369 |
Q |
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| T |
9625094 |
agatatattacataaccttctagcatcttctttcctttttagtcttttaaattatgtcatgttattttaaaattagtataatatgcaatatagagt---- |
9625189 |
T |
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| Q |
370 |
atctcttactgtctttctaggattgtttgaacttcttttgatcatcatcaatttgagcaaac |
431 |
Q |
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| T |
9625190 |
-ggtcctactgcctttctaggattgtttgaacttcttttgatcatcatcaatttgagcaaac |
9625250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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