View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_23 (Length: 444)
Name: NF16735_low_23
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 52536043 - 52536423
Alignment:
| Q |
18 |
attatgaagaagcaatgcatggggtggggggactggcactttgcaaaatggaaagatcacaatcacatcattgcttgatatcaaattgtgcattggaatc |
117 |
Q |
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| T |
52536043 |
attatgaagaagcaatgcatggggtggggggactggcactttgcaaaatggaaagatcacaatcacatcattgcttgatatcaaattgtgcattggaatc |
52536142 |
T |
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| Q |
118 |
atttttggtacgaattaggaaagaattagacaaggtatgatcgaacttttatttccacaatataccatagccactaacattatttctt------------ |
205 |
Q |
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| T |
52536143 |
atttttggtacgaattaggaaagaattagacaaggtatgatcgaacttttatttccacaatataccatagccactaacattatttctttttccttttctc |
52536242 |
T |
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| Q |
206 |
tac--ccggtcgaataataattgagaataaggaatagctgacacgagaata-ggaagttaccccaaccattaattagtttttctctttttctcatcttat |
302 |
Q |
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| T |
52536243 |
tacggccggtcgaataataattgagaataaggaatagctgacacgagaatagggaagttaccccaaccattaattagtttttctctttttctcatcttat |
52536342 |
T |
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| Q |
303 |
cttacagagtaattttgttatatttcttctgttctgaatcagttatatataaatttcattcttgttcaactactagaatat |
383 |
Q |
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| T |
52536343 |
cttacagagtaattttgttatatttcttctgttctgaatcagttatatataaatttcattcttgttcaactactagaatat |
52536423 |
T |
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