View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_24 (Length: 444)
Name: NF16735_low_24
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 517989 - 518405
Alignment:
| Q |
19 |
taccatgtggtgataattgtggagttagcataaattggcatatagtttcagattacaaaggtggatggagtgctagaatcactttgttcaattggaaacc |
118 |
Q |
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| T |
517989 |
taccatgtggtgataattgtggagttagcataaattggcatatagtttcagattacaaaggtggatggagtgctagaatcactttgttcaattggaaacc |
518088 |
T |
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| Q |
119 |
attcccttttgagaattggttcactgcaatgcaatttaagaaaagtgtttctcttggttttgagaaagtgtattctttcaatgggtcattgcttacaaaa |
218 |
Q |
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| T |
518089 |
attcccttttgagaattggttcactgcaatgcaatttaagaaaagtgtttctcttggttttgagaaagtgtattctttcaatgggtcattgcttacaaaa |
518188 |
T |
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| Q |
219 |
atcaacaacactattttcatgcaaggattacaaggaacaaggtatttgataggtgaagacaatggaacatacctaaaggttcctggaaaacaacaatctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
518189 |
ttcaacaacactattttcatgcaaggattacaaggaacaagctatttgataggtgaagacaatggaacatacctaaaggttcctggaaaacaacaatctg |
518288 |
T |
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| Q |
319 |
ttatttcctttaccaaaaaattcaaaccgaatatgcaaatagcaaaaggagatgggttcccttcaaaggttcttttcaatggagaagagtgttcaattcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
518289 |
ttatttcctttaccaaaaaattcaaaccgaatatgcaaatagcaaaaggagatgggttcccttcaaaggttcttttcaatggagaagagtgttcaattcc |
518388 |
T |
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| Q |
419 |
aacccaattccctatgc |
435 |
Q |
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| T |
518389 |
aacccaattccctatgc |
518405 |
T |
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