View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_26 (Length: 441)
Name: NF16735_low_26
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 1516307 - 1515898
Alignment:
| Q |
17 |
atggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516307 |
atggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttg |
1516208 |
T |
|
| Q |
117 |
tacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatgga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516207 |
tacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatgga |
1516108 |
T |
|
| Q |
217 |
acaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516107 |
acaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaa |
1516008 |
T |
|
| Q |
317 |
gatgatcataataactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatctattgatccaaaaatt |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1516007 |
gatgatcatactaactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaatt |
1515908 |
T |
|
| Q |
417 |
attctttcat |
426 |
Q |
| |
|
|||||||||| |
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| T |
1515907 |
attctttcat |
1515898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 1530537 - 1530132
Alignment:
| Q |
17 |
atggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530537 |
atggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttg |
1530438 |
T |
|
| Q |
117 |
tacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatgga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530437 |
tacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatgga |
1530338 |
T |
|
| Q |
217 |
acaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530337 |
acaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaa |
1530238 |
T |
|
| Q |
317 |
gatgatcataataactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatctattgatccaaaaatt |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1530237 |
gatgatcatactaactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaatt |
1530138 |
T |
|
| Q |
417 |
attctt |
422 |
Q |
| |
|
|||||| |
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|
| T |
1530137 |
attctt |
1530132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 7978452 - 7978615
Alignment:
| Q |
274 |
atcatggggtagtagaatgagggccaaaaacaa---tataaccaaagatgatcataataactagt-----------ttcctttccatatgattattttgt |
359 |
Q |
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|||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
7978452 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgt |
7978551 |
T |
|
| Q |
360 |
taatgtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcat |
426 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||| |
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|
| T |
7978552 |
---tgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
7978615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 7978392 - 7978454
Alignment:
| Q |
21 |
atgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatc |
83 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||| |
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|
| T |
7978392 |
atgacataaagagagaatatagaacaatggctctttagtatcatcctgatttgtgtcgtgatc |
7978454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 37592995 - 37593131
Alignment:
| Q |
17 |
atggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttg |
116 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||| || ||||||||||||||||| |||||||||| || | ||||||||||||||| || || |||| |
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| T |
37592995 |
atggaagatataaagagagcttatagatcaatggcacttcagtatcatcctgatgtgtgtcatgatccttccatgaaagaggaatcaactaaaatatttg |
37593094 |
T |
|
| Q |
117 |
tacaactcaatgcagcttatgagactttgtcaaatcc |
153 |
Q |
| |
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| | | |||||||||||||| |||||||| ||||| |
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|
| T |
37593095 |
ttcggttaaatgcagcttatgaaactttgtcgaatcc |
37593131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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