View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_27 (Length: 438)
Name: NF16735_low_27
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 5680562 - 5680148
Alignment:
| Q |
12 |
atgaatatgaatttcgaagttcaggaggtaccgaatattgtatgatttgtttgattaaccaaacaaaccatacactattagatactaaagaactcctcaa |
111 |
Q |
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| T |
5680562 |
atgaatatgaatttcgaagttcaggaggtaccgaatattgtatgatttgtttgattaaccaaacaaaccatacactattagatactaaagaactcctcaa |
5680463 |
T |
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| Q |
112 |
ctattatccatacagtctttgaacaaaatcactcatgagctactact---catccaccctatactaccactcatacatcctcttttgaaaagttgataat |
208 |
Q |
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| T |
5680462 |
ctattatccatacagtctttgaacaaaatgactcatgagctactactactcatccgccctatactaccactcatacatcctcttttgaaaagttgataat |
5680363 |
T |
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| Q |
209 |
ttgctttgaattgccctcgcgtttactcgaattgaggatctccttttttgtattgtcaagtagtgtttcattttaagcaaggttgataagttgtatcata |
308 |
Q |
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| T |
5680362 |
ttgctttgaattgccctcgcgcttactcgaattgaggatctccttttttgtattgtcaagtagtgtttcattttaagcaaggttgataagttgtatcata |
5680263 |
T |
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| Q |
309 |
gctttcttggtacaagagacgattttgtttggtacctaattttattgttaagcttttaagcttggacttatagagtgtaatatcaatattttgcacataa |
408 |
Q |
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| T |
5680262 |
gctttcttggtacaagagacgattttgtttggtaccaaattttattgttaagcttttaagcttggacttatagagtgtaatatcaatattttgcacataa |
5680163 |
T |
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| Q |
409 |
tcttgtaaaacatct |
423 |
Q |
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| T |
5680162 |
tcttgtaaaacatct |
5680148 |
T |
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