View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_28 (Length: 432)
Name: NF16735_low_28
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 42125869 - 42125443
Alignment:
| Q |
1 |
catggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125869 |
catggttcttccaaaaacctgcttcaatccaaagcttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctac |
42125770 |
T |
|
| Q |
101 |
catgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125769 |
catgttttctgaagttcaatcaaatcccattgcctttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttct |
42125670 |
T |
|
| Q |
201 |
ttgactcgtttactcaaaagtcaaaagcaaacacacttcaaaacctggcttcaaaaccaattgattctttcctgccaccttagatttgcaaagcttctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
42125669 |
ttgactcgtttactcaaaagtcaaaagcaaacacacttcaaaacctggcttcaaaaccaaatgattctttcctgccaccttaaatttgcaaagcttctct |
42125570 |
T |
|
| Q |
301 |
caggaacagaagccttctgcgtatacttacgccttatcggtgccaaaattggtaagcattgttccattagagcaatcaatccagtttcaaaccccgagtt |
400 |
Q |
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| T |
42125569 |
caggaacagaagccttctgcgtatacttacgccttattggtgccaaaattggtaagcattgttccattagagcaatcaatccagtttcaaaccccgagtt |
42125470 |
T |
|
| Q |
401 |
aatgtcaattggtgatgatgtccatct |
427 |
Q |
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| T |
42125469 |
aatgttaattggtgatggtgttcatct |
42125443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 428
Target Start/End: Complemental strand, 24929134 - 24928738
Alignment:
| Q |
35 |
cttttcatttgtttgcatatgtggtgcctttcattggattccattcactattactgcatatgctaccatgttttctgaagttcaatcaaatcccattgcc |
134 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||||||||| | |||||| ||||| || |
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| T |
24929134 |
cttttcatttgtttgcatatgtggtgcttttcactggatcccatttaccgtcattgcatatgctaccatgttttctgaagtcccatcaaaccccatcacc |
24929035 |
T |
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| Q |
135 |
tttgccatttcatttacatgtgcttacttgcttcatggtctcatactcacctctctcacatgttctttgactcgtttactcaaaagt---caaaagcaaa |
231 |
Q |
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||||||||| ||||||| || ||||||||||| ||||| ||||||| | ||||||| | ||| |||||| | |||| | | ||||| |||| |
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| T |
24929034 |
tttgccattacatttaccatcgcctacttgcttcacggtctaatactcatcgctctcaccgctgtttttactcgtctcctcatacataaccaaaaacaaa |
24928935 |
T |
|
| Q |
232 |
cacacttcaaaacctggcttcaaaaccaattgattctttcctgccaccttagatttgcaaagcttctctcaggaacagaagccttctgcgtatacttacg |
331 |
Q |
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| | |||||||||||||||||| | ||| | | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
24928934 |
ctaaattcaaaacctggcttcaatgtcgattaaacatctcctgccaccttagatgtgctaagcttctctcaggaacagaagccttctgcgtatatttgcg |
24928835 |
T |
|
| Q |
332 |
ccttatcggtgccaaaattggtaagcattgttccattagagcaatcaatccagtttcaaaccccgagttaatgtcaattggtgatgatgtccatctc |
428 |
Q |
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|||| | || || |||||||| |||||||| ||||| |||| ||||| ||||||||||| || ||| ||||||||||||||| | |||||||||| |
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| T |
24928834 |
ccttttaggcgcaaaaattggcaagcattgctccatccgagccatcaacccagtttcaaatccagagctaatgtcaattggtgccggtgtccatctc |
24928738 |
T |
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