View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_3 (Length: 663)

Name: NF16735_low_3
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_3
NF16735_low_3
[»] chr6 (3 HSPs)
chr6 (4-258)||(22628199-22628453)
chr6 (407-643)||(22627197-22627434)
chr6 (295-331)||(6725323-6725359)
[»] chr3 (17 HSPs)
chr3 (1-254)||(30862156-30862409)
chr3 (173-254)||(15493298-15493379)
chr3 (5-58)||(15493132-15493185)
chr3 (200-254)||(53722966-53723020)
chr3 (6-52)||(30688262-30688308)
chr3 (214-254)||(21229170-21229210)
chr3 (6-58)||(44995531-44995583)
chr3 (14-58)||(50175518-50175562)
chr3 (295-334)||(15493430-15493469)
chr3 (203-254)||(21228593-21228644)
chr3 (295-330)||(51974630-51974665)
chr3 (215-254)||(51974716-51974755)
chr3 (295-331)||(26549894-26549930)
chr3 (295-331)||(28410778-28410814)
chr3 (295-331)||(35852892-35852928)
chr3 (295-331)||(43022987-43023023)
chr3 (295-331)||(46572609-46572645)
[»] chr7 (9 HSPs)
chr7 (454-586)||(39585336-39585468)
chr7 (454-586)||(39579006-39579138)
chr7 (369-431)||(39585226-39585288)
chr7 (173-254)||(1939456-1939537)
chr7 (6-55)||(24794113-24794162)
chr7 (6-58)||(25037969-25038021)
chr7 (200-252)||(33379756-33379808)
chr7 (214-254)||(43201497-43201537)
chr7 (295-331)||(43570794-43570830)
[»] chr2 (4 HSPs)
chr2 (211-254)||(9331222-9331265)
chr2 (196-253)||(16218330-16218387)
chr2 (197-246)||(43494814-43494863)
chr2 (6-58)||(38902401-38902453)
[»] chr5 (7 HSPs)
chr5 (215-254)||(36610023-36610062)
chr5 (296-331)||(21368638-21368673)
chr5 (199-254)||(34917937-34917992)
chr5 (296-334)||(7827494-7827532)
chr5 (295-331)||(12913235-12913271)
chr5 (295-331)||(14279219-14279255)
chr5 (295-331)||(34529065-34529101)
[»] chr4 (7 HSPs)
chr4 (200-254)||(39532732-39532786)
chr4 (181-258)||(39048593-39048670)
chr4 (295-331)||(39113431-39113467)
chr4 (6-58)||(51392864-51392916)
chr4 (6-52)||(19410158-19410204)
chr4 (295-331)||(55597-55633)
chr4 (295-331)||(55408217-55408253)
[»] chr1 (7 HSPs)
chr1 (6-58)||(44334967-44335019)
chr1 (296-334)||(37646090-37646128)
chr1 (218-252)||(38212820-38212854)
chr1 (296-334)||(44450918-44450956)
chr1 (296-334)||(44651456-44651494)
chr1 (181-254)||(36303566-36303639)
chr1 (181-254)||(48729904-48729977)
[»] chr8 (4 HSPs)
chr8 (8-58)||(24431567-24431617)
chr8 (181-254)||(30289301-30289373)
chr8 (200-253)||(39810599-39810652)
chr8 (214-254)||(17494136-17494176)
[»] scaffold1183 (1 HSPs)
scaffold1183 (295-331)||(29-65)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 22628453 - 22628199
Alignment:
Q  4 tttgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaagctacagacaaagggcgacgtggcgcaattcggtttgctgaaaca 103  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22628453 tttgttgaaggatgatgtggaggaaagagatgttgaatggttttaacatgttaaagctacagacaaagggcgacgtggcgcaattcggtttgctgaaaca 22628354  T
Q  104 ggcgcttgaggcacacgcgcctacagtgggaagtgaagcagcaggcgtggagagagaaagttggtcagaggataagcggtgacacttggcagttcctgat 203  Q
    || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||    
T  22628353 ggtgcttgaggcagacgcgcctacagtgggaagtgaagcagcaggcgtagagagagaaagttggtgagaggataagtggtgacacttggcagttcctaat 22628254  T
Q  204 tggttgtctagatttatctcattttaattatttgaactcaattatttcatttcaa 258  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22628253 tggttgtctagatttatctcattttatttatttgaactcaattatttcatttcaa 22628199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 407 - 643
Target Start/End: Complemental strand, 22627434 - 22627197
Alignment:
Q  407 tttagaagagtggaaatgtaacaat--ttgtgttaataatatttaatatgatccctaagcttcaataacaatttctcattgtcaacttctgcaattctca 504  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22627434 tttagaagagtggaaatgtaacaataatagtgttaataatatttaatgtgatccctaagctttaataacaatttctcattgtcaacttctgcaattctca 22627335  T
Q  505 ccagtctatctatcaggtatctcctttcttgctgtccaaatttgtatacatcaatttcatagacctgttcttcagaggtagtaaacgcgatatgaattta 604  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22627334 ccagtctttctatcaggtatctcctttcttgctgtccaaatttgtatacatcaatttcatagacctgttcttcagaggtagtaaacgcgatatgaattta 22627235  T
Q  605 agctttgtggtagatctcctgattaggaaaggaagagag 643  Q
    |||||||||||||||||||| || ||| |||||||||||    
T  22627234 agctttgtggtagatctcctaatcagg-aaggaagagag 22627197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 6725323 - 6725359
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  6725323 gtctataaatagagacttggttcatttgatttggaca 6725359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 30862156 - 30862409
Alignment:
Q  1 agttttgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaagctacagacaaagggcgacgtggcgcaattcggtttgctgaa 100  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  30862156 agttttgttgaaggatgatgtggagaaaagagacgttgaatggtttcaacatgttgaagctgaagacaaagggcgacgtgacgcgattcggtttgctgaa 30862255  T
Q  101 acaggcgcttgaggcacacgcgcctacagtgggaagtgaagcagcaggcgtggagagagaaagttggtcagaggataagcggtgacacttggcagttcct 200  Q
    |||||||| ||||||||||  ||||||  ||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  30862256 acaggcgcgtgaggcacacatgcctactatgggaagtgaagcagcaggtgcggagagagaaagttggtgagaggataagtggtgacaattggcagttcct 30862355  T
Q  201 gattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30862356 gattggctgtctggatttatctcattttaattatttgaactcaattatttcatt 30862409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 15493298 - 15493379
Alignment:
Q  173 ggataagcggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||| |||||||||||||||||| ||||||| |||||| |||| | |||||||||| ||||||||||||||||||||||    
T  15493298 ggataagtggtgacacttggcagttcgtgattggctgtctaaatttttatcattttaataatttgaactcaattatttcatt 15493379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 15493132 - 15493185
Alignment:
Q  5 ttgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  15493132 ttgttgaaggatgatgtggaggaaagagatgttgaatgcattcaacatgttgaa 15493185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 53723020 - 53722966
Alignment:
Q  200 tgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||    
T  53723020 tgattggttgtttggatttatctcatcttaataatttgaactcaattatttcatt 53722966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 30688262 - 30688308
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacat 52  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  30688262 tgttgaaggatgatgtggaagaaagagaggttgaatggtttcaacat 30688308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 21229170 - 21229210
Alignment:
Q  214 gatttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  21229170 gatttatctcatcttaattatttggactcaattatttcatt 21229210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 44995583 - 44995531
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||| |||||| ||||||| ||||||||||||||  ||||||||||||||    
T  44995583 tgttgaatgatgatgtggaggagagagatgttgaatgcattcaacatgttgaa 44995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 50175518 - 50175562
Alignment:
Q  14 gatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  50175518 gatgatatggaggaaagaggtgatgaatgttttcaacatgttgaa 50175562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 15493430 - 15493469
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggacatag 334  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  15493430 gtctataaatagagacttggttcatttgatttggacatag 15493469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 21228644 - 21228593
Alignment:
Q  203 ttggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||| || ||||||||| || ||||||||||| ||||||||||||||||    
T  21228644 ttggttggctggatttatcttatcttaattatttggactcaattatttcatt 21228593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 51974665 - 51974630
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggac 330  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51974665 gtctataaatagaaacttggttcatttgatttggac 51974630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 51974755 - 51974716
Alignment:
Q  215 atttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  51974755 atttatttcattttaataatttgaactcaattatttcatt 51974716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 26549894 - 26549930
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  26549894 gtctataaataaagacttggttcatttgatttggaca 26549930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 28410814 - 28410778
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  28410814 gtctataaatagagacttggttcatttgatttggaca 28410778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 35852892 - 35852928
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  35852892 gtctataaatagagacttggttcatttgatttggaca 35852928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 43023023 - 43022987
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  43023023 gtctataaatagagacttggttcatttgatttggaca 43022987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 46572609 - 46572645
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  46572609 gtctataaatagagacttggttcatttgatttggaca 46572645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 454 - 586
Target Start/End: Original strand, 39585336 - 39585468
Alignment:
Q  454 gatccctaagcttcaataacaatttctcattgtcaacttctgcaattctcaccagtctatctatcaggtatctcctttcttgctgtccaaatttgtatac 553  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  39585336 gatccctgagcttcaataacaatttctcattgtcaacatctgcaattctcaccagtctatctatcaggtatctcctttcttgctgcccaagtttgtatac 39585435  T
Q  554 atcaatttcatagacctgttcttcagaggtagt 586  Q
    |||||||||| | |||||| ||| |||||||||    
T  39585436 atcaatttcacaaacctgtcctttagaggtagt 39585468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 454 - 586
Target Start/End: Original strand, 39579006 - 39579138
Alignment:
Q  454 gatccctaagcttcaataacaatttctcattgtcaacttctgcaattctcaccagtctatctatcaggtatctcctttcttgctgtccaaatttgtatac 553  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  39579006 gatccctgagcttcaataacaatttctcattgtcaacatctgcaattctcaccagtctatctatcaggtatctcctttcttgctgcccaagattgtatac 39579105  T
Q  554 atcaatttcatagacctgttcttcagaggtagt 586  Q
    |||||||||| | |||||| ||| |||||||||    
T  39579106 atcaatttcacaaacctgtcctttagaggtagt 39579138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 39585226 - 39585288
Alignment:
Q  369 gaaatcaaatattttgaagatgtgatcaaaatgatggatttagaagagtggaaatgtaacaat 431  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  39585226 gaaatcaaatattttgaaaatgtgatcaaaatcatggatttaaaagagtggaaatgtaacaat 39585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 1939456 - 1939537
Alignment:
Q  173 ggataagcggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||| | || ||| ||||| || |||||||| |  || |||||||||||||||||||||||||||| ||||||||||||    
T  1939456 ggataagagctgtcacgtggcacttgctgattggcttgctggatttatctcattttaattatttgaactgaattatttcatt 1939537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 24794162 - 24794113
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgtt 55  Q
    ||||||| |||||| |||| |||||||| |||||||||||||||||||||    
T  24794162 tgttgaatgatgatgtggatgaaagagaggttgaatggtttcaacatgtt 24794113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 25037969 - 25038021
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||| |||||| || |||| ||||||||||||||  ||||||||||||||    
T  25037969 tgttgaatgatgatgtgaaggagagagatgttgaatgcattcaacatgttgaa 25038021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 33379808 - 33379756
Alignment:
Q  200 tgattggttgtctagatttatctcattttaattatttgaactcaattatttca 252  Q
    ||||||||||||| ||||| | |||| ||||| |||| |||||||||||||||    
T  33379808 tgattggttgtctggatttttatcatcttaataatttcaactcaattatttca 33379756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 43201497 - 43201537
Alignment:
Q  214 gatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  43201497 gatttttctcatcttaataatttgaactcaattatttcatt 43201537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 43570794 - 43570830
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  43570794 gtctataaatagagacttggttcatttgatttggaca 43570830  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 9331222 - 9331265
Alignment:
Q  211 ctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  9331222 ctagatttatctcatcttaattatttgaactcaattatttcatt 9331265  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 16218330 - 16218387
Alignment:
Q  196 ttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcat 253  Q
    |||||| ||||  |||| |||||||||||| |||||||||||||||||||||| ||||    
T  16218330 ttcctggttggccgtctggatttatctcatcttaattatttgaactcaattatctcat 16218387  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 43494814 - 43494863
Alignment:
Q  197 tcctgattggttgtctagatttatctcattttaattatttgaactcaatt 246  Q
    |||||||||||||| | |||||||||||||||||| |||| |||||||||    
T  43494814 tcctgattggttgtttggatttatctcattttaataatttaaactcaatt 43494863  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 38902453 - 38902401
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||| |||||||||||||| ||||||||||||||  |||||||| |||||    
T  38902453 tgttgaatgatgatatggaggagagagatgttgaatgcattcaacatattgaa 38902401  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 36610062 - 36610023
Alignment:
Q  215 atttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36610062 atttatctcatcttaattatttgaactcaattatttcatt 36610023  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 331
Target Start/End: Complemental strand, 21368673 - 21368638
Alignment:
Q  296 tctataaatataaacttggttcatttgatttggaca 331  Q
    |||||||||| |||||||||||||||||||||||||    
T  21368673 tctataaatagaaacttggttcatttgatttggaca 21368638  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 34917937 - 34917992
Alignment:
Q  199 ctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||||||||| | |||||||||||| ||||| ||||| ||| ||||||||||||    
T  34917937 ctgattggttgtttggatttatctcatcttaataatttgtacttaattatttcatt 34917992  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 7827532 - 7827494
Alignment:
Q  296 tctataaatataaacttggttcatttgatttggacatag 334  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  7827532 tctataaatagagacttggttcatttgatttggacatag 7827494  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 12913271 - 12913235
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  12913271 gtctataaataaagacttggttcatttgatttggaca 12913235  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 14279255 - 14279219
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  14279255 gtctataaatagagacttggttcatttgatttggaca 14279219  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 34529065 - 34529101
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  34529065 gtctataaatagagacttggttcatttgatttggaca 34529101  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 39532732 - 39532786
Alignment:
Q  200 tgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||||||||| | |||||||||||  ||||| ||||||||||||||||||||||    
T  39532732 tgattggttgtttggatttatctcaacttaataatttgaactcaattatttcatt 39532786  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 39048593 - 39048670
Alignment:
Q  181 ggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatttcaa 258  Q
    |||||||| |||| | | |||||||| | |||  |||| |||| ||||||| ||||||||||||||||||||||||||    
T  39048593 ggtgacacgtggctgattctgattggctttctgaatttttctctttttaataatttgaactcaattatttcatttcaa 39048670  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 39113431 - 39113467
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39113431 gtctataaatatagacttggttcatttgatttggaca 39113467  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 51392916 - 51392864
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||| |||||| ||||||| ||||||||||||||  ||||||||||||||    
T  51392916 tgttgaatgatgatgtggaggagagagatgttgaatgcattcaacatgttgaa 51392864  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 19410204 - 19410158
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacat 52  Q
    ||||||||| |||| |||| |||||||| ||||||||||||||||||    
T  19410204 tgttgaagggtgatgtggatgaaagagaggttgaatggtttcaacat 19410158  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 55597 - 55633
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  55597 gtctataaatagagacttggttcatttgatttggaca 55633  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 55408217 - 55408253
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  55408217 gtctataaatagagacttggttcatttgatttggaca 55408253  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 44335019 - 44334967
Alignment:
Q  6 tgttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||||| |||||||||||||| ||| ||||||||||  ||||||||||||||    
T  44335019 tgttgaatgatgatatggaggagagaaatgttgaatgcattcaacatgttgaa 44334967  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 37646090 - 37646128
Alignment:
Q  296 tctataaatataaacttggttcatttgatttggacatag 334  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  37646090 tctataaatagagacttggttcatttgatttggacatag 37646128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 38212854 - 38212820
Alignment:
Q  218 tatctcattttaattatttgaactcaattatttca 252  Q
    |||||||| ||||||||||||||||||||||||||    
T  38212854 tatctcatcttaattatttgaactcaattatttca 38212820  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 44450918 - 44450956
Alignment:
Q  296 tctataaatataaacttggttcatttgatttggacatag 334  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  44450918 tctataaatagagacttggttcatttgatttggacatag 44450956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 44651494 - 44651456
Alignment:
Q  296 tctataaatataaacttggttcatttgatttggacatag 334  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  44651494 tctataaatagagacttggttcatttgatttggacatag 44651456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 36303639 - 36303566
Alignment:
Q  181 ggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||||| |||| | | |||||||| | |||| |||  ||||||| |||| ||||||||||||||||||||||    
T  36303639 ggtgacacgtggctgattctgattggctatctaaattattctcattctaataatttgaactcaattatttcatt 36303566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 48729977 - 48729904
Alignment:
Q  181 ggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    |||||||| |||| | | |||||||| | |||| |||  ||||||| |||| ||||||||||||||||||||||    
T  48729977 ggtgacacgtggctgattctgattggctatctaaattattctcattctaataatttgaactcaattatttcatt 48729904  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24431567 - 24431617
Alignment:
Q  8 ttgaaggatgatatggaggaaagagatgttgaatggtttcaacatgttgaa 58  Q
    ||||| |||||| ||||||| ||||||||||||||  ||||||||||||||    
T  24431567 ttgaatgatgatgtggaggagagagatgttgaatgcattcaacatgttgaa 24431617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 30289301 - 30289373
Alignment:
Q  181 ggtgacacttggcagttcctgattggttgtctagatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||| ||||| |||||||| ||||| |||||   |||||||||| |||||| ||| |||||||||||||||||    
T  30289301 ggtgaaacttgccagttccttattggctgtctttttttatctcatcttaatt-tttaaactcaattatttcatt 30289373  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 39810599 - 39810652
Alignment:
Q  200 tgattggttgtctagatttatctcattttaattatttgaactcaattatttcat 253  Q
    |||||||||  || |||| ||||||| |||||||||| ||||||||||||||||    
T  39810599 tgattggtttgctcgattaatctcatcttaattatttaaactcaattatttcat 39810652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 17494136 - 17494176
Alignment:
Q  214 gatttatctcattttaattatttgaactcaattatttcatt 254  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  17494136 gatttttctcatcttaataatttgaactcaattatttcatt 17494176  T

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Target: scaffold1183 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1183
Description:

Target: scaffold1183; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 65 - 29
Alignment:
Q  295 gtctataaatataaacttggttcatttgatttggaca 331  Q
    ||||||||||| | |||||||||||||||||||||||    
T  65 gtctataaatagatacttggttcatttgatttggaca 29  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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