View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_30 (Length: 425)
Name: NF16735_low_30
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 35901109 - 35900799
Alignment:
| Q |
20 |
caaaacccaaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35901109 |
caaaacccaaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcactgtcacaatattaatat |
35901010 |
T |
|
| Q |
120 |
ggccccaatcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaa-----tattcaccacattcaaacctcaataacagatctttgaat |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35901009 |
ggctccaatcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaatacagtattcaccacattcaaacctcaataacagatctttgaat |
35900910 |
T |
|
| Q |
215 |
tgaaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgatcccaacaatttgggatataaa |
314 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900909 |
tgaaatactgaattattcagtcaaagaggatcagacgcacaaaaaaataagaacaaaatgttcatactttttcactgatcccaacaatttgggatataaa |
35900810 |
T |
|
| Q |
315 |
ccaagcaaaaa |
325 |
Q |
| |
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||||||||||| |
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| T |
35900809 |
ccaagcaaaaa |
35900799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 35884899 - 35884617
Alignment:
| Q |
20 |
caaaacccaaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatat |
119 |
Q |
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|||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35884899 |
caaaacccaaaaggtaccacaacatacagcattaaagcatgagagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatat |
35884800 |
T |
|
| Q |
120 |
ggcccca----------atcttttgcctgtcaccttcgggagcgtaagaacagtcaagaacacaaatattcaccacattcaaacctcaataacagatctt |
209 |
Q |
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| ||||| ||||| ||| | |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
35884799 |
gtccccaaagttttgccatcttatgcttatcaccttcaggagcgtaagaacagtcaagaacacaaatatttaccacgttcaaacctcaataacaaatctt |
35884700 |
T |
|
| Q |
210 |
tgaattgaaatactgaattattcagacaaagaggatcagacgcacnnnnnnntaagaacaaaatgttcatactttttcactgat |
293 |
Q |
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|||||||||||||| |||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
35884699 |
tgaattgaaatacttaattattcagtcagagaggatcagacgcac-agaaaataagaacaaaacattcatactttttcactgat |
35884617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 35900734 - 35900696
Alignment:
| Q |
377 |
attttgctacttgtactgcattatttaccaccacctatg |
415 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||| |
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| T |
35900734 |
attttgccacttgtactgcattatttaccaccacttatg |
35900696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 10209532 - 10209646
Alignment:
| Q |
22 |
aaacccaaaaggtaccacaacatatagccttaaatcatgaaagttacctctttgagcaatagattcatcaaaccatttcattgtcacaatattaatatgg |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||| ||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| ||| ||| |
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| T |
10209532 |
aaacccaaaaggtaccacaacatacagcactaaagcataaaagttacctcttcgagcaacagattgatcaaaccatttcattgtgacaatatgaatgtgg |
10209631 |
T |
|
| Q |
122 |
ccccaatcttttgcc |
136 |
Q |
| |
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|||||| ||||||| |
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|
| T |
10209632 |
ccccaacgttttgcc |
10209646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 10209712 - 10209763
Alignment:
| Q |
203 |
agatctttgaattgaaatactgaattattcagacaaagaggatcagacgcac |
254 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
10209712 |
agatctttgaattgaaatactgaattattcagtcagagaggatcagatgcac |
10209763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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