View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_33 (Length: 421)
Name: NF16735_low_33
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_33 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 41708565 - 41708952
Alignment:
| Q |
19 |
ctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41708565 |
ctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcatt |
41708664 |
T |
|
| Q |
119 |
gatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactcca |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41708665 |
gatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactcca |
41708764 |
T |
|
| Q |
219 |
attcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctct |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41708765 |
attcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctct |
41708864 |
T |
|
| Q |
319 |
tttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
41708865 |
tttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctcgtttttttctccatttcaaccttctcttga |
41708952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 41717637 - 41718024
Alignment:
| Q |
19 |
ctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41717637 |
ctccatagtgtcattgtcaatctcatattcactctcttcatctctgatttcaaagttagtaatcaaaggaataccaagagcctcaatattcttcttcatt |
41717736 |
T |
|
| Q |
119 |
gatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactcca |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717737 |
gatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactcca |
41717836 |
T |
|
| Q |
219 |
attcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctct |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41717837 |
attcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctct |
41717936 |
T |
|
| Q |
319 |
tttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgnnnnnnnctccatttcaaccttctcttga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
41717937 |
tttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaaccttgtttttttctccatttcaaccttctcttga |
41718024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 182 - 412
Target Start/End: Original strand, 41686347 - 41686580
Alignment:
| Q |
182 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgtttt---ct |
278 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||| | || | ||||| || |
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|
| T |
41686347 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
41686446 |
T |
|
| Q |
279 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcgn |
378 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
41686447 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgt |
41686546 |
T |
|
| Q |
379 |
nnnnnnctccatttcaaccttctcttgatgatgt |
412 |
Q |
| |
|
||||| ||||| |||||||||| ||||| |
|
|
| T |
41686547 |
tagtctctccaattcaaacttctcttgaagatgt |
41686580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 161 - 376
Target Start/End: Original strand, 41659334 - 41659549
Alignment:
| Q |
161 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
260 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| || |||| ||||| || |
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|
| T |
41659334 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctcctt |
41659433 |
T |
|
| Q |
261 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
360 |
Q |
| |
|
|| |||| | |||||||||||||||| ||| || ||||||||||| | ||||| ||||| ||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
41659434 |
caactaaactagttttcttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttc |
41659533 |
T |
|
| Q |
361 |
ctcggcttcaaacctc |
376 |
Q |
| |
|
|| |||| ||||||| |
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|
| T |
41659534 |
ttcagcttgaaacctc |
41659549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 363
Target Start/End: Complemental strand, 41688006 - 41687801
Alignment:
| Q |
161 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
260 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| ||||| | | |
|
|
| T |
41688006 |
ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct |
41687907 |
T |
|
| Q |
261 |
cagctaagtttgtttt---cttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc |
357 |
Q |
| |
|
|| || | ||||| || ||||||||||| || ||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||| ||| |
|
|
| T |
41687906 |
caatcaaactagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatc |
41687807 |
T |
|
| Q |
358 |
ttcctc |
363 |
Q |
| |
|
|||||| |
|
|
| T |
41687806 |
ttcctc |
41687801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 14682517 - 14682426
Alignment:
| Q |
272 |
gttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctc |
363 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||| |||||||| | ||||||| |||||| || || ||||| |||||||| |
|
|
| T |
14682517 |
gttttcttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctc |
14682426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 14682687 - 14682624
Alignment:
| Q |
96 |
gagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcattttt |
162 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |
|
|
| T |
14682687 |
gagcctcacaattcttcttcattgatttctc---caactcactatttttcaccccaaatgcattttt |
14682624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 368
Target Start/End: Complemental strand, 14691033 - 14690869
Alignment:
| Q |
204 |
aaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcata |
303 |
Q |
| |
|
||||||| |||||||||||||| || ||| || |||||| | ||||| ||| ||||| |||| | ||||||||| |||| |||| | |||||||| |
|
|
| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
|
| Q |
304 |
attattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggctt |
368 |
Q |
| |
|
|||||| ||||| |||| || | |||||||||||||| || || ||||||||||||| |||| |
|
|
| T |
14690933 |
attattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagctt |
14690869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
166 |
atcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttct |
237 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| |||||| | || |||||||||| ||||||||||||||| |
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|
| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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