View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_35 (Length: 418)
Name: NF16735_low_35
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 45123194 - 45123581
Alignment:
| Q |
19 |
ttaagtatatatatgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttggagattgtgggtgtaccggga |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45123194 |
ttaagtatatatctgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttggagattgtgggtgtatcgggg |
45123293 |
T |
|
| Q |
119 |
tcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgttattggacaatgatcatagtttcgtctccgctttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45123294 |
tcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaatgatcatagtttcgtctccgctttt |
45123393 |
T |
|
| Q |
219 |
tgaagtttccacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaat |
318 |
Q |
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| T |
45123394 |
tgaagtttctacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaat |
45123493 |
T |
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| Q |
319 |
gtatccttctatgaatgtctattacagaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtcttcatctca |
406 |
Q |
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| T |
45123494 |
atatccttctatgaatgtctattacaaaatattatgaatattagtgatgatgtattgattaaatgtatttttaacggtcttcatctca |
45123581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
147 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
194 |
Q |
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| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
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