View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_36 (Length: 413)

Name: NF16735_low_36
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_36
NF16735_low_36
[»] chr1 (3 HSPs)
chr1 (87-413)||(5129589-5129914)
chr1 (13-58)||(5129522-5129567)
chr1 (336-413)||(26324506-26324584)
[»] chr5 (8 HSPs)
chr5 (318-413)||(8527890-8527985)
chr5 (197-410)||(8643414-8643630)
chr5 (293-411)||(8640456-8640574)
chr5 (318-398)||(8636121-8636201)
chr5 (320-410)||(8534468-8534558)
chr5 (318-371)||(8549058-8549111)
chr5 (318-371)||(9075311-9075364)
chr5 (293-357)||(9002289-9002353)
[»] chr4 (1 HSPs)
chr4 (318-413)||(9442057-9442152)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 87 - 413
Target Start/End: Original strand, 5129589 - 5129914
Alignment:
Q  87 aacaaggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaattttacaataaaaagaaaagacatcatttgcatcctaaaa 186  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  5129589 aacaaggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcattttcatcctaaaa 5129687  T
Q  187 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129688 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 5129787  T
Q  287 atattgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaa 386  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5129788 atattaaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaa 5129887  T
Q  387 ttgtactaagcaggagtcagaatacca 413  Q
    |||||||||||||||||||||||||||    
T  5129888 ttgtactaagcaggagtcagaatacca 5129914  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 5129522 - 5129567
Alignment:
Q  13 agatgaagaaaagcatatataagacatcaggaaactgaatgataaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5129522 agatgaagaaaagcatatataagacatcaggaaactgaatgataaa 5129567  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 26324584 - 26324506
Alignment:
Q  336 tataaaataagaccaatattacgtaacaaagcctaa-ataatgtgcctaaaattgtactaagcaggagtcagaatacca 413  Q
    |||||||||| ||||||||||| |||||||| ||||  |||  | |||||||||||| |||||| | ||||||||||||    
T  26324584 tataaaataacaccaatattacataacaaagtctaagttaacatacctaaaattgtaataagcaagggtcagaatacca 26324506  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 8527890 - 8527985
Alignment:
Q  318 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaatacca 413  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||||| ||||||||||||    
T  8527890 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaggggtcagaatacca 8527985  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 410
Target Start/End: Original strand, 8643414 - 8643630
Alignment:
Q  197 cataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaag--tctcaccg---gaggagggtacctgtcaagagtcat-at 290  Q
    ||||||||| ||| ||||||| ||  | |||| ||| ||||||||||||||||||||||  |||||| |   ||||||||||| |||||||  |||| ||    
T  8643414 cataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggaggagggtacttgtcaag--tcatcat 8643511  T
Q  291 tgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgt 390  Q
    | ||||||||||||| ||||    |  |||||||||||||||||||||||||||| |||||||||||  || | ||||||| ||| ||||||||||||||    
T  8643512 tcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgt 8643610  T
Q  391 actaagcaggagtcagaata 410  Q
    | || ||| | |||||||||    
T  8643611 agtatgcaagggtcagaata 8643630  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 411
Target Start/End: Original strand, 8640456 - 8640574
Alignment:
Q  293 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtac 392  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||||||||||| ||||||  |||| ||||||| |||| ||| |||||||||||||||     
T  8640456 aagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaaattgtag 8640555  T
Q  393 taagcaggagtcagaatac 411  Q
    |||||||| |||| |||||    
T  8640556 taagcaggggtcaaaatac 8640574  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 8636121 - 8636201
Alignment:
Q  318 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagca 398  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| ||||| | |||||| |||||||||||| ||||||    
T  8636121 ttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaattgtattaagca 8636201  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 8534468 - 8534558
Alignment:
Q  320 aaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaata 410  Q
    |||||||| ||||||||||||||||| ||||||||||| | || ||| |||| |||  | |||||||||||| |||||| | |||||||||    
T  8534468 aaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattgtaataagcaagggtcagaata 8534558  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 8549111 - 8549058
Alignment:
Q  318 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 371  Q
    ||||| ||||||| |||||| ||||||| ||||||||||| |||||||| ||||    
T  8549111 ttaaactttgcacgcctatacaaaataacaccaatattacataacaaaggctaa 8549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 9075364 - 9075311
Alignment:
Q  318 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 371  Q
    |||||||||||||||||||||||||||| | || ||||||  ||||||| ||||    
T  9075364 ttaaaatttgcacacctatataaaataacaacagtattacacaacaaagtctaa 9075311  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 9002289 - 9002353
Alignment:
Q  293 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattac 357  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||| |||| || |||||||||||    
T  9002289 aagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattac 9002353  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 9442057 - 9442152
Alignment:
Q  318 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaatacca 413  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||| | ||||||||||||    
T  9442057 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacca 9442152  T

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