View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_37 (Length: 412)
Name: NF16735_low_37
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 16192325 - 16191935
Alignment:
| Q |
9 |
catcacattttgtatatagttcttgttaaaatttccattttcatgcataaaattgaaaaatgatgaagagaaagaaatactctacattaatagtgcatac |
108 |
Q |
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| T |
16192325 |
catcacattttgtatatagttcttgttaaaatttccattttcatgcataaaattaaaaaatgatgaagagaaagaaatactctacattaat-gtgcatac |
16192227 |
T |
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| Q |
109 |
aaataaaagaaaaagattatttaa--gccttcatttatgaacacctaacttacatttgtctagttaatattctcatttatcatcgttctctcataagtaa |
206 |
Q |
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| T |
16192226 |
aaataaaagaaaaagattatttaaaagccttcatttatgaacacctaacttacacttgtctagttaatattctcatttatcatcgttctctcataagtaa |
16192127 |
T |
|
| Q |
207 |
tgttggcaccaccatagccacaatgtagtgttaatgctaataggcaatagcaatagcaatgattatctttaataaattctcattagtgtttaatagttgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
16192126 |
tgttggcaccaccatagccacaatgtagtgttaatgctaataggcaatagcaatagcaatgcttatctttaataaattctcattagtatttaatagttgg |
16192027 |
T |
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| Q |
307 |
cattctagttaaaaatacatgaacatagtcatggagattttctccattatacaactccatcttaaaaatcaatgccaattttggtagcaact |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
16192026 |
cattctagttaaaaatacatgaacatagtcatggagattttctccattatacaactcaatcttaaaaatcaatgccaatttaggtagcaact |
16191935 |
T |
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