View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_38 (Length: 410)
Name: NF16735_low_38
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 27257417 - 27257038
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27257417 |
attatatttaatcaaaggcttacaatagtttctaagttaactcagtgtgtgcacccttttctcccaatctcacactattattgttttcaatcattaaaaa |
27257318 |
T |
|
| Q |
116 |
actcagattgcatacatgatgcatcacgaattattcttgtttacatttccatattctctcg--gttaattcctcaaattgaattgctgccaattcctggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27257317 |
actcagattgcatacatgatgcatcacgaattattcttgtttacatctccatattctctcttagttaattcctcaaattgaattgctgccaattcctggt |
27257218 |
T |
|
| Q |
214 |
gtacaaacaaaaaatcaagagttatccatcccattccatcccatatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27257217 |
gtacaaacaaaaaatcaagagttatccatcccatcccatcccatatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaac |
27257118 |
T |
|
| Q |
314 |
tagggtattttagatgag-nnnnnnnnnactaccgaagggatttttggtgtcgaaattgaaacaagtgagaagaaacatc |
392 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27257117 |
tagggtattttagatgagttttttttttactaccgaagggatttttggtgtcgaaattgaaacaagtgagaagaaacatc |
27257038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 4433202 - 4433254
Alignment:
| Q |
73 |
tttctctcaatctcacactattattgttttcaatcattaaaaaactcagattg |
125 |
Q |
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|
||||| |||||| ||||||||||||||||| ||| |||| |||||||| |||| |
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|
| T |
4433202 |
tttctttcaatcacacactattattgttttaaatgattacaaaactcaaattg |
4433254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 28705223 - 28705364
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
28705223 |
attatatttaatcaaaggctcacaatagtttctaatttaactcattgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa |
28705321 |
T |
|
| Q |
116 |
actcagattgcatacatgat-gcatcacgaattattcttgttt |
157 |
Q |
| |
|
|||||||| ||||| ||||| |||||| || |||||||||||| |
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|
| T |
28705322 |
actcagatcgcatatatgatcgcatcatgatttattcttgttt |
28705364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 26159615 - 26159433
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||| ||| |||||| |||| |
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|
| T |
26159615 |
attatatttaatcaaaggctcacaatagtttctaatttaactcaccgtgtgcacccttt-ctcacaatctcacactattattgtgttcgatcattcaaaa |
26159517 |
T |
|
| Q |
116 |
actcagattgcatacatgat-gcatcacgaattattcttgtttacatttcca--tattctctc--ggttaattcctcaaattga |
194 |
Q |
| |
|
|||||||||||||| ||||| |||||| || |||||||||||| ||| || | ||||||||| ||||||||||||| ||||| |
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|
| T |
26159516 |
actcagattgcatatatgatcgcatcatgatttattcttgtttgcatctcgatctattctctcttggttaattcctcacattga |
26159433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 9365582 - 9365511
Alignment:
| Q |
256 |
atatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaactagggtattttagatgag |
331 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
9365582 |
atatggattgcaaatttcatgagatcaatcccaattagaggaaa----ctagtgaaactagggtattttagatgag |
9365511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 26159235 - 26159185
Alignment:
| Q |
189 |
aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc |
239 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
26159235 |
aattgaattgctaccaattcctggcatacaagcaaaaagtcaagagttatc |
26159185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 26636161 - 26636302
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
26636161 |
attatatttaatcaaaggctcacaatagtttctaatttaactcatcgtatgcacccttt-ctctcaatctcacactattattattttcagtcattcaaaa |
26636259 |
T |
|
| Q |
116 |
actcagattgcatacatgat-gcatcacgaattattcttgttt |
157 |
Q |
| |
|
|||||||||||||| ||||| |||||| || |||||||||||| |
|
|
| T |
26636260 |
actcagattgcatatatgatcgcatcatgatttattcttgttt |
26636302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 26636606 - 26636656
Alignment:
| Q |
189 |
aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc |
239 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
26636606 |
aattgaattgtttccaattcctggcatacaaacaaaaaatcaagatttatc |
26636656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 41474709 - 41474827
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41474709 |
attatatttaatcaaaggctcacaatagtttctaatttaactcatcgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa |
41474807 |
T |
|
| Q |
116 |
actcagattgcatacatgat |
135 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
41474808 |
actcagatcgcatatatgat |
41474827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 41475048 - 41475098
Alignment:
| Q |
189 |
aattgaattgctgccaattcctggtgtacaaacaaaaaatcaagagttatc |
239 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
41475048 |
aattgaattgttaccaattcctggcatacaaacaaaaaatcaagatttatc |
41475098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 52282143 - 52282110
Alignment:
| Q |
298 |
aggaagctagtgaaactagggtattttagatgag |
331 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
52282143 |
aggaaactagtgaaactagggtattttagatgag |
52282110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 22559917 - 22560035
Alignment:
| Q |
16 |
attatacttactcaaaggctcacaatagtttctaaattaactcggtgtgtgcacccttttctctcaatctcacactattattgttttcaatcattaaaaa |
115 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22559917 |
attatatttaatcaaaggctcatgatagtttctaatttaactcatcgtgtgcacccttt-ctctcaatctcacactattattgttttcagtcattcaaaa |
22560015 |
T |
|
| Q |
116 |
actcagattgcatacatgat |
135 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
22560016 |
actcagatcgcatatatgat |
22560035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 37065101 - 37065172
Alignment:
| Q |
256 |
atatggattgcaattttcatgagactgatcccaatttgaggaaggaagctagtgaaactagggtattttagatgag |
331 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
37065101 |
atatggattgcaaatttcatgagatcaatcccaattagaggaaa----ctagtgaaactagggtattttagatgag |
37065172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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