View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_39 (Length: 409)
Name: NF16735_low_39
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 32738557 - 32738179
Alignment:
| Q |
20 |
cacagtacctacctacacagcgtcaacatcttactatgctgggtgcatgcctcttttaaatttgttctactacaaacatgcaaaatttaatatattgggt |
119 |
Q |
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| T |
32738557 |
cacagtacctacctacacagcgtcaacatcttactatgctgggtgcatgcctcttttaaatttgttctactgcaaacatgcaaaatttaatatattgggt |
32738458 |
T |
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| Q |
120 |
gaaggaaattcatgaattatgcgaattatagttcatttttattcaaacataaaaatttattaaggtaacttgtgtactattatgggtgccgtggtttatg |
219 |
Q |
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| T |
32738457 |
gaaggaaattcatgaattatgcgaat--tagttcatttttattcaaacataataa--tattaaggtaacttgtgtacgattatgggtgccgtggtttatg |
32738362 |
T |
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| Q |
220 |
gtcaaacttcacttcataattgatttcagggcattaattattttgctatgtattcattcaaacctttgaattttgaaacatcatgtcaatctgaagcgac |
319 |
Q |
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| T |
32738361 |
gtcaaacttcacttcataattga-ttcagggcattaattattttgctatgtattcattcaaacctttgaattttgaaacatcatatcaatctgaagcgac |
32738263 |
T |
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| Q |
320 |
ttttgatactttgacacacgccaggacttgaaaaagagcaccacttttcataattatgtgtctaatttctcaggtgacatatttc |
404 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32738262 |
ttttgatac-ttgacacacgccaggacttgaaaaagagcaccacttttgataattatgtgtctaatttctcaggtgacatatttc |
32738179 |
T |
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