View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_4 (Length: 649)
Name: NF16735_low_4
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 194 - 639
Target Start/End: Original strand, 35900288 - 35900734
Alignment:
| Q |
194 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgt-tggtacatgaatttttgttctctgtttttatattattcttaattatgatatacacct |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35900288 |
tgtcattgtgaaaaatgttttggctccagagtacaaggtcgtctggtacatgaatttttgttctctgtttttatattattcttaactatgatatacacct |
35900387 |
T |
|
| Q |
293 |
tttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
392 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900388 |
tttaaaatcaatgtaaaaaacatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctagcagtacaaatctttta |
35900487 |
T |
|
| Q |
393 |
ggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggtt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900488 |
ggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggtt |
35900587 |
T |
|
| Q |
493 |
ctattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgcaagtgtcaatcattgtacttcttagt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
35900588 |
gtattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatcttagt |
35900687 |
T |
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| Q |
593 |
ggcaaaatcataagtggtggtaaataatgcagttcaagtagcaaaat |
639 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
35900688 |
ggcaaaatcataagtggtggtaaataatgcagtacaagtggcaaaat |
35900734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 411 - 584
Target Start/End: Original strand, 35882821 - 35882995
Alignment:
| Q |
411 |
gatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctattattttatggtatt |
510 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
35882821 |
gatgatgttttcactgttcgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggctgtattattttatggtatt |
35882920 |
T |
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| Q |
511 |
ataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgcaagtgtcaatcattgtac |
584 |
Q |
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||||||||||||||| |||||||||||| | ||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
35882921 |
gtaaaattagtaaaggatcagagtgaaaatctttatctacttgaatacgtataatgtaagtgtcaatcattgtac |
35882995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 35882302 - 35882478
Alignment:
| Q |
116 |
tgcaggttaagatagatgaattaatgagcgatatggggggagctctacacactaaaccgtgtcatcaaatttaaactctgtcattgtgaaaaatgttttg |
215 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| | |
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| T |
35882302 |
tgcaggttaagatagatgaattaatgattgaaatggggggagctctacacactacaccgt--catcagatttaaactctgtcattgtgaaaaatgtttgg |
35882399 |
T |
|
| Q |
216 |
gctccagagtacaaggtcgttggtacatga-atttttgttctctgtttttatattattcttaattatgatatacacctttt |
295 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| || ||||||||| |||| |
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| T |
35882400 |
gctccagagtacaaggtc--tggtacatgatgtttttgttctatgtttttatattattcttagctaggatatacacttttt |
35882478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 35900191 - 35900287
Alignment:
| Q |
53 |
cttttattgaaacgctcataagttttcagttatttctcttggtattttatccttcannnnnnntgcaggttaagatagatgaattaatgagcgatat |
149 |
Q |
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| T |
35900191 |
cttttattgaaacgctcataagttttcagttatttctcttggtattttatccttcactccccctgcaggttaagatagatgaattaatgagcgatat |
35900287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 584
Target Start/End: Original strand, 33311177 - 33311302
Alignment:
| Q |
458 |
atttctaatttgaagcttatgttagttcactggttctattattttatggtattataaaattagtaaagggtcagagtgaaaacctt-atctacttgaata |
556 |
Q |
| |
|
|||| |||||||||||||||||| | | ||||||| |||||||||||||| || |||||||||| |||| |||||||||||| ||| |||||| | |||| |
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| T |
33311177 |
atttataatttgaagcttatgttggct-actggttgtattattttatggt-ttgtaaaattagtgaaggatcagagtgaaaatctttatctacgtaaata |
33311274 |
T |
|
| Q |
557 |
tgtaaaatgcaagtgtcaatcattgtac |
584 |
Q |
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|||| |||| ||| |||||||||||||| |
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| T |
33311275 |
tgtataatgtaagggtcaatcattgtac |
33311302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 35882635 - 35882717
Alignment:
| Q |
294 |
ttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctag |
376 |
Q |
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|
||||||||||| ||||||||||||||| |||||||| ||||||||||| || ||||| ||||||| |||||||||||||||| |
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| T |
35882635 |
ttaaaatcaatctaaaaagcatctagttcaagggaggaagattctggttatggttggcgttaattagctctacttttggctag |
35882717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35900139 - 35900182
Alignment:
| Q |
17 |
ttctccatatggttgacaagtccaagactacttgggcttttatt |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900139 |
ttctccatatggttgacaagtccaagactacttgggcttttatt |
35900182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 398 - 582
Target Start/End: Complemental strand, 10211529 - 10211345
Alignment:
| Q |
398 |
attatgttaaaatgatgatgtttt-cggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctat |
496 |
Q |
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||||||||||| ||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
10211529 |
attatgttaaa--gatgatgtttttcagtgtttgatttatcttgaaccaaaggtggatttcatttctaatttgaagcttatgttggttcactggttataa |
10211432 |
T |
|
| Q |
497 |
tattttatggtattataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgcaagtgtcaatcattgt |
582 |
Q |
| |
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| |||||||||| | ||||||||||||| |||||| ||||| | |||| ||| | ||||||||||||| |||||||||||||||| |
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|
| T |
10211431 |
tgttttatggtagtgtaaaattagtaaataatcagagcgaaaatctttatgtacgtaaatatgtaaaatgtaagtgtcaatcattgt |
10211345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 116 - 288
Target Start/End: Complemental strand, 10212016 - 10211850
Alignment:
| Q |
116 |
tgcaggttaagatagatgaattaatgagcgatatggggggagctctacacactaaaccgtgtcatcaaatttaaactctgtcattgtgaaaaatgttttg |
215 |
Q |
| |
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|||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||| | ||| |||| |||| |||||| ||||||||||||||| |
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| T |
10212016 |
tgcaggttaagatagaagaattagtgactgaaatggggggagctctaca---taaaccga--cgtcagatttgaactttgtcatcgtgaaaaatgttttg |
10211922 |
T |
|
| Q |
216 |
gctccagagtacaaggtcgttggtacatgaa-tttttgttctctgtttttatattattcttaattatgatatac |
288 |
Q |
| |
|
|||| | ||||||||||| |||||| |||| |||||||||| | |||||||||||||| || ||||| |||| |
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| T |
10211921 |
gctcaaaagtacaaggtc--tggtacctgaagtttttgttctgtacttttatattattctcaactatgacatac |
10211850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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