View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_41 (Length: 406)

Name: NF16735_low_41
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_41
NF16735_low_41
[»] chr6 (1 HSPs)
chr6 (108-400)||(10396854-10397144)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 108 - 400
Target Start/End: Complemental strand, 10397144 - 10396854
Alignment:
Q  108 gttattgttgaattttgttgtcagatttgtgtctcaaaatataatcctcgattttgaaaacagttgtttgtcttttttaagagattagtttttgagactt 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10397144 gttattgttgaattttgttatcagatttgtgtctcaaaatataatcctcgattttgaaaacagttgtttgtctttattaagagattagtttttgagactt 10397045  T
Q  208 tatctacaaaatgaaaaaagagatcagtttttgacttgctagtagaaaatacccnnnnnnngacaaaaagtataaaaataccctcaatagctaaaaatac 307  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||    
T  10397044 tatctacaaaatgaaaaatgagataagtttttgacttgctagtagaaaata-ccattttttgacaaaaagtataaaaataccctcaatagctaaaaatac 10396946  T
Q  308 aaaatgtgacatctaagacannnnnnnnaattacataacccctatcactcctatctgttgctaaaactctccaccaagaaatttgatgatgtc 400  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10396945 aaaatgtgacatctaagaca-tttttttaattacataacccctatcactcctatctgttgctaaaactctccaccaagaaatttaatgatgtc 10396854  T

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