View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_43 (Length: 403)
Name: NF16735_low_43
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 28264740 - 28265126
Alignment:
| Q |
1 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264740 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttatcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaa |
28264839 |
T |
|
| Q |
101 |
tgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264840 |
taactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
28264939 |
T |
|
| Q |
201 |
aaaaactgctccaaaaccaccttgacccaactttctatccttcgaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggtcctgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||| |
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| T |
28264940 |
aaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgct |
28265039 |
T |
|
| Q |
301 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtatta |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
28265040 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttc-ctctcttttcctctttagtatta |
28265126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 28294555 - 28294932
Alignment:
| Q |
1 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
28294555 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccaacccaaaagcttcacaagattcctatgtctcagttgactaa |
28294654 |
T |
|
| Q |
101 |
tgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28294655 |
tgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
28294754 |
T |
|
| Q |
201 |
aaaaactgctccaaaaccaccttgacccaactttctatccttcgaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggtcctgct |
300 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28294755 |
ataaacagctccaaaaccaccttgacccaactttctatccttagagaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggccctgct |
28294854 |
T |
|
| Q |
301 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctc |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
28294855 |
cctctttcaagatcatcattcattgaagtcaaatgcatagcctcttccttttgcttattacttctctttcttttcctc |
28294932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 28304757 - 28305144
Alignment:
| Q |
1 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| |
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|
| T |
28304757 |
agactaccatttggcatgaactcataaataagtagaaactcacctttgtcatggcaccagcctaagagcttcacaagattcctatgtctcagttgactaa |
28304856 |
T |
|
| Q |
101 |
tgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28304857 |
taactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
28304956 |
T |
|
| Q |
201 |
aaaaactgctccaaaaccaccttgacccaactttctatccttcgaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggtcctgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||| |
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|
| T |
28304957 |
aaaaactgctccaaaaccaccttgacccaactttctatccttagaaaagttattggttgccaactcaagttctttgtaggtaaacctccttggccctgct |
28305056 |
T |
|
| Q |
301 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtatta |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28305057 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtatta |
28305144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 28288996 - 28288619
Alignment:
| Q |
1 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| || |||| |
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|
| T |
28288996 |
agactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcctaagagcttcacaagattcctatgtctcagctggctaa |
28288897 |
T |
|
| Q |
101 |
tgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaaccttt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
28288896 |
taactttaacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttcacagcaacggctaaatcttgatcgaaaaagtaaccttt |
28288797 |
T |
|
| Q |
201 |
aaaaactgctccaaaaccaccttgacccaactttctatccttcgaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggtcctgct |
300 |
Q |
| |
|
| |||| |||||||||||||||||||| || |||||||| | | ||| |||||||| |||||||||||||||| |||||| ||||| ||||| |||||| |
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|
| T |
28288796 |
ataaacagctccaaaaccaccttgacctaattttctatcgtcggtaaatttattggtagccaaatcaagttcttggtaggtaaacctccttggccctgct |
28288697 |
T |
|
| Q |
301 |
cctctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctc |
378 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
28288696 |
cctctttgaaggtcatcattcattgttcttaaatgcatagcctcttcctttttctttttacttctctttattttcctc |
28288619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 369
Target Start/End: Complemental strand, 28279128 - 28278763
Alignment:
| Q |
4 |
ctaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaatga |
103 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||| || | | |||||||||||| | ||||||| | | ||||||| |
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|
| T |
28279128 |
ctaccgttaggcataaactcataaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgggctaatga |
28279029 |
T |
|
| Q |
104 |
ctttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttcacagcaacttgtaaatctaaatcagcaaagtaacctttaaa |
203 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||| | |||||||||||||||||||| |||||||| |||| ||||| ||||||| | |
|
|
| T |
28279028 |
ctttaacttcagtaacatactctttcttcccttgtctagatcccttcgatattttcttcacagcaaccggtaaatctggatcaaaaaagttacctttata |
28278929 |
T |
|
| Q |
204 |
aactgctccaaaaccaccttgacccaactttctatccttcgaaaagttattggttgccaaatcaagttctttgtaggtgaaccttcttggtcctgctcct |
303 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| | || |||||||| || || |||| ||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
28278928 |
tacagctccaaacccaccttgacccaactttctatccctagagaagttattagtggctaaattaagttctttgtaggtgaacctccttggccctgctcct |
28278829 |
T |
|
| Q |
304 |
ctttcaaggtcatcattcattgaagtcaaatgcatagcctcttccttttgcttttcacttctcttt |
369 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
28278828 |
ctttcaagatcgtcattcattgaagttaaactcatagcctcttccttttctttttttcttctcttt |
28278763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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