View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_44 (Length: 394)
Name: NF16735_low_44
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 43109034 - 43109421
Alignment:
| Q |
1 |
catatagaaaacgcacagagaatgagctttgataatttgggattcaaagaaaagataagtaaattttgatatatacttaatttttggatcaaactaaa-- |
98 |
Q |
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| T |
43109034 |
catatagaaaacgcacagagaatgagctttgttaatttgggattcaaagaaaagataagtaaattttgacatatacttaatttttggatcaaacaaaaga |
43109133 |
T |
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| Q |
99 |
-------atatgtttaaggataactctcacttcatacttttattgtattttaccttcgctctattattttagtttttgtgtcgatgcatatattatctta |
191 |
Q |
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| T |
43109134 |
caagtaaacaaatttaaggacaattctcacttcatacttttattatattttacccttgctctattgttttggtttttgtgtcgatgcatacattatctta |
43109233 |
T |
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| Q |
192 |
tacatatttttagatgtttaatttaataaattgttctaacatagttgttcgaataacatacctaattattacacctaaacatcaaaatcttataannnnn |
291 |
Q |
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| T |
43109234 |
tacatatttttagatgtttaatttaataaattgttctaacatagttgttcaaatgacatacctaattattacacctaaacatcaaaatcttataattttt |
43109333 |
T |
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| Q |
292 |
nnggtggaaatacatg-tttgttatatcgtgaaaaatattaattgtatatgcttgtttagtattttcctttagatcttaaaataatgg |
378 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109334 |
ttggtggaaatacatgttttgttatatcgtgaaaaatattaattgtatatgcttgtttagtattttcctttagatcttaaaataatgg |
43109421 |
T |
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