View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_45 (Length: 390)
Name: NF16735_low_45
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 373
Target Start/End: Complemental strand, 39600923 - 39600575
Alignment:
| Q |
25 |
cacttgaagaagaatctcagccgcagactagtcgtaaacgtaagcatccttctaaccctaagaaacaaaactgggcagagacaataaacccaccttttcc |
124 |
Q |
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| T |
39600923 |
cacttgaagaagaatctcagccgcagactagtcgtaaacgtaagcattcttctaaccctaagaaacaaaactgggcagagacaataaacccaccttttcc |
39600824 |
T |
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| Q |
125 |
atgggctacttgtaaacgtgccaaagtttataccattcaccacttgctatctaaaggcttcaacacaattagtggaaaggttgaatgcggaaaatgcgat |
224 |
Q |
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| T |
39600823 |
atgggctacttgtaaacgtgccaaagtttataccattcaccacttgctatctaaaggcttcaacacaattagtggaaaggttgaatgcggaaaatgcgat |
39600724 |
T |
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| Q |
225 |
tttcaaagcgttcttgaatttgatttgaacgaaaagtttaatgaagttgttgagttcattgaaaacaacaagaacgacatgaatgatcgtgcacctgagg |
324 |
Q |
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| T |
39600723 |
tttcaaagcgttcttgaatttgatttgaacgaaaagtttaatgaagttgttgagttcattgaaaacaacaagaacgacatgaatgatcgtgcacctgagg |
39600624 |
T |
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| Q |
325 |
cttggatgaatcctatgcttccaaagtgcgaaaagtgtggacaagaaaa |
373 |
Q |
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| T |
39600623 |
cttggatgaatcctatgcttccaaagtgcgaaaagtgtggacaagaaaa |
39600575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 375
Target Start/End: Original strand, 39781205 - 39781400
Alignment:
| Q |
180 |
ggcttcaacacaattagtggaaaggttgaatgcggaaaatgcgattttcaaagcgttcttgaatttgatttgaacgaaaagtttaatgaagttgttgagt |
279 |
Q |
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| T |
39781205 |
ggcttcaacacaatcggtggaacggttcaatgcaaacaatgtggcttccaacgtgttctccaatttgatttgaaggaaaagtttgatgaagttgttgagt |
39781304 |
T |
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| Q |
280 |
tcattgaaaacaacaagaacgacatgaatgatcgtgcacctgaggcttggatgaatcctatgcttccaaagtgcgaaaagtgtggacaagaaaatg |
375 |
Q |
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| T |
39781305 |
tcattgaaaagaacaagtacaacatgcatgatcgtgcacctaaggcttggatgaatcctgtgcttcccaaatgcgacaagtgtggacaagaaaatg |
39781400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 39780115 - 39780228
Alignment:
| Q |
63 |
cgtaagcatccttctaaccctaagaaacaaaactgggcagagacaataaacccaccttttccatgggctacttgtaaacgtgccaaagtttataccattc |
162 |
Q |
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| T |
39780115 |
cgtaagcatctttctatacccaagaaacagaagtggacagagacaataaacccaccattcccatgggccacttgcaaacgtgccaaagtttataccattc |
39780214 |
T |
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| Q |
163 |
accacttgctatct |
176 |
Q |
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| T |
39780215 |
accaattgctatct |
39780228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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