View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_47 (Length: 381)
Name: NF16735_low_47
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 11881334 - 11881695
Alignment:
| Q |
7 |
tccaagaaaataaaacttggaaacataaaatgaaaataatttagtttctaactcaaatattaacctatgaatcaatctagaaataaaatgtttgttctat |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11881334 |
tccaacaaagtaaaacttggaaacataaaatgaaaataatttagtttctaactcaaatattaacctatgaatcaatctagaaataaaatgtttgttctat |
11881433 |
T |
|
| Q |
107 |
tgctataataaggaattctttatgcaataagtctatttcaataagtatgaaaaaa-tcaaaatgagtggaaaattaaatgagcaac----caaccaacca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11881434 |
tgctataataaggaattctttatgcaataagtctatttcaataagtatgaaaaaaatcaaaatgagtggaaaattaaatgagcaaccaaccaaccaacca |
11881533 |
T |
|
| Q |
202 |
acgcaaactggtccggcaccctggcttgttacattgtcttaatttgtttaacatataaaatcatagtatgagtatgatttttgctaaaataaaataaaca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11881534 |
acgcaaactggtccggcaccctggcttgttacattgtcttaatttgtttagcatataaaatcatagtatgagtatgatttttgctaaaataaaataaaca |
11881633 |
T |
|
| Q |
302 |
aatactttctttagttttggtgagtattacaagttattacaactcatcattgataatggaaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11881634 |
aatactttctttagttttggtgagtattacaagttattacaactcatcattgataatggaaa |
11881695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University