View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_48 (Length: 380)

Name: NF16735_low_48
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_48
NF16735_low_48
[»] chr6 (18 HSPs)
chr6 (17-370)||(33057158-33057511)
chr6 (101-238)||(33644699-33644836)
chr6 (86-222)||(33285322-33285458)
chr6 (82-219)||(33262357-33262494)
chr6 (86-229)||(33387875-33388018)
chr6 (17-222)||(9166489-9166697)
chr6 (86-220)||(33304214-33304348)
chr6 (96-219)||(28870323-28870446)
chr6 (101-227)||(31562983-31563109)
chr6 (101-163)||(33271582-33271644)
chr6 (89-194)||(33398828-33398933)
chr6 (168-227)||(33358656-33358715)
chr6 (88-219)||(33409709-33409840)
chr6 (20-69)||(33644606-33644655)
chr6 (18-65)||(31562888-31562935)
chr6 (20-59)||(33358799-33358838)
chr6 (87-128)||(33358714-33358755)
chr6 (20-69)||(33388047-33388096)
[»] scaffold1408 (1 HSPs)
scaffold1408 (81-227)||(367-513)
[»] scaffold0428 (1 HSPs)
scaffold0428 (81-227)||(6113-6259)
[»] chr2 (1 HSPs)
chr2 (27-227)||(17440953-17441147)
[»] chr4 (6 HSPs)
chr4 (86-227)||(31499199-31499340)
chr4 (87-219)||(31472695-31472827)
chr4 (88-219)||(31479154-31479285)
chr4 (86-139)||(31148108-31148161)
chr4 (91-222)||(31156951-31157082)
chr4 (30-72)||(31504269-31504311)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 33057511 - 33057158
Alignment:
Q  17 acattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaatagttaatccaggaagtgaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33057511 acattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttcctcttctgagattcaaatagttaatccaggaagtgaaata 33057412  T
Q  117 ccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatcattggtattgtatgtt 216  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057411 ccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatcattggtattgtatgtt 33057312  T
Q  217 gtgcagcatttacgacggcaccctatcgtgaaagtttttgttcgtcgaagttgatgtatctggctttcaagcgtattgattccaatgagaggttgttgaa 316  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33057311 gtgcagcatttacgatggcaccctatcgtgaaattttttattcctcggagttgatgaatctggctttcaagcgtattgattccaatgagaggttgttgaa 33057212  T
Q  317 tatgagagttccagtaaatctcagtcttgttaccaccaaatcaagtcacctatg 370  Q
     ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  33057211 aatgagagttccagtaaagctcagtcttgttacgaccaaatcaagtcacctatg 33057158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 33644699 - 33644836
Alignment:
Q  101 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatc 200  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||   |||||||||| |||||||||| |||||||||||    
T  33644699 tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc 33644798  T
Q  201 attggtattgtatgttgtgcagcatttacgacggcacc 238  Q
    |||||  ||||||||||||||| |||||| | ||||||    
T  33644799 attggatttgtatgttgtgcagtatttaccatggcacc 33644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 33285458 - 33285322
Alignment:
Q  86 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 185  Q
    |||||| || |||| ||||||||||||||||||||||||||| || ||||||||  |||||  |||||||||||||||| | |||||||||| |||||||    
T  33285458 gattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgac 33285359  T
Q  186 aatgacaataatatcattggtattgtatgttgtgcag 222  Q
    ||| ||||||||||||||||  |||||||||||||||    
T  33285358 aataacaataatatcattggctttgtatgttgtgcag 33285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 33262494 - 33262357
Alignment:
Q  82 atgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 181  Q
    ||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||   ||||||||| |||    
T  33262494 atgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgca 33262395  T
Q  182 tgacaatgacaataatatcattggtattgtatgttgtg 219  Q
    ||| ||| ||||||||||||||||  || |||||||||    
T  33262394 tgataataacaataatatcattggctttctatgttgtg 33262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 33388018 - 33387875
Alignment:
Q  86 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 185  Q
    ||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||   |  ||||||| |||||||    
T  33388018 gattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgac 33387919  T
Q  186 aatgacaataatatcattggtattgtatgttgtgcagcatttac 229  Q
    ||| ||||||||||||||||  || |||||||||||| ||||||    
T  33387918 aataacaataatatcattggctttctatgttgtgcagtatttac 33387875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 9166697 - 9166489
Alignment:
Q  17 acattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgtt---actcttatgagattcaaatagttaatccaggaagtgaa 113  Q
    ||||||||| ||||||||| ||| ||||||||  ||||| ||| ||||||||||||  |   ||| | ||  ||||||||| ||||  ||||||| ||||    
T  9166697 acattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccaccatcccactttgataggattcaaattgttacgccaggaattgaa 9166598  T
Q  114 ataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatcattggtattgtat 213  Q
    |||||||||||||||||||||| |||  ||| |  ||| |||||||||||||   ||||||||| |||||||||| ||||||||||||||||  ||||||    
T  9166597 ataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataacaataatatcattggctttgtat 9166498  T
Q  214 gttgtgcag 222  Q
    |||||||||    
T  9166497 gttgtgcag 9166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 33304348 - 33304214
Alignment:
Q  86 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 185  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||  ||||| ||||||||| ||||||||| |||||||||| |||||||    
T  33304348 gattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgac 33304249  T
Q  186 aatgacaataatatcattggtattgtatgttgtgc 220  Q
    ||| ||||| ||||||||||  || ||||||||||    
T  33304248 aataacaattatatcattggctttctatgttgtgc 33304214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 28870323 - 28870446
Alignment:
Q  96 gttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaata 195  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||| |||||||   ||||||||||   |||||||| ||||||    
T  28870323 gttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaata 28870422  T
Q  196 atatcattggtattgtatgttgtg 219  Q
    ||||||||||  ||||||||||||    
T  28870423 atatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 31562983 - 31563109
Alignment:
Q  101 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatc 200  Q
    |||||||||||||||||| | ||||||||||||||| || |||||| ||||||||||||||||    ||||||  || ||||||||||  |||| |||||    
T  31562983 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatc 31563082  T
Q  201 attggtattgtatgttgtgcagcattt 227  Q
    |||||  ||||||||||||||| ||||    
T  31563083 attggctttgtatgttgtgcagtattt 31563109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 33271644 - 33271582
Alignment:
Q  101 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaataga 163  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  33271644 tccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga 33271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 33398933 - 33398828
Alignment:
Q  89 tcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaat 188  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||| ||||||||  ||||||  || |||||| |||    
T  33398933 tcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataat 33398834  T
Q  189 gacaat 194  Q
     |||||    
T  33398833 aacaat 33398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 33358715 - 33358656
Alignment:
Q  168 tctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcattt 227  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  33358715 tctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 33358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 33409840 - 33409709
Alignment:
Q  88 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 187  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||  |||||  ||||||| |||| ||    |||||| |||   |||||||    
T  33409840 ttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaa 33409741  T
Q  188 tgacaataatatcattggtattgtatgttgtg 219  Q
    | |||||||||| |||||  ||||| ||||||    
T  33409740 taacaataatattattggctttgtaagttgtg 33409709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 33644606 - 33644655
Alignment:
Q  20 ttgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc 69  Q
    |||||||||||||||| ||| |||||||| |||||||||| |||||||||    
T  33644606 ttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacc 33644655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 31562888 - 31562935
Alignment:
Q  18 cattgcaggagcatgacacttttatggatgaaacaattcattaaggca 65  Q
    |||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  31562888 cattgcaggagcatgacattttcatggatggcacaattcattaaggca 31562935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 33358838 - 33358799
Alignment:
Q  20 ttgcaggagcatgacacttttatggatgaaacaattcatt 59  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  33358838 ttgcagtagcatgacactttcatggatgaaacaattcatt 33358799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 33358755 - 33358714
Alignment:
Q  87 attcaaatagttaatccaggaagtgaaataccaagttggatc 128  Q
    ||||||||||||| ||||||||||||||| | ||||||||||    
T  33358755 attcaaatagttactccaggaagtgaaatgctaagttggatc 33358714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 33388096 - 33388047
Alignment:
Q  20 ttgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc 69  Q
    |||||| ||||||||| ||| |||||||| |||||| |||||||||||||    
T  33388096 ttgcagtagcatgacattttcatggatgacacaatttattaaggcaaacc 33388047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 513 - 367
Alignment:
Q  81 tatgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggc 180  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  |    
T  513 tatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatac 414  T
Q  181 atgacaatgacaataatatcattggtattgtatgttgtgcagcattt 227  Q
    |||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  413 atgacaataagaataatatcattggctttgtattttgtgcagtattt 367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 6259 - 6113
Alignment:
Q  81 tatgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggc 180  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  |    
T  6259 tatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatac 6160  T
Q  181 atgacaatgacaataatatcattggtattgtatgttgtgcagcattt 227  Q
    |||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  6159 atgacaataagaataatatcattggctttgtattttgtgcagtattt 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 17440953 - 17441147
Alignment:
Q  27 agcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaatagttaatccaggaagtgaaataccaagttgga 126  Q
    ||||||||| ||| ||||||||  ||||||||||||||||||||    || |   ||  |||||| || |||| ||||||||| ||||||||||||||||    
T  17440953 agcatgacattttcatggatgatgcaattcattaaggcaaaccctttctatttgaataggattcatattgttagtccaggaagcgaaataccaagttgga 17441052  T
Q  127 tcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatt 226  Q
    |||||||| ||||  ||||| ||||||||  ||||||||  |||||||||| ||      |||||||||||||||||||| ||||||||||||||| |||    
T  17441053 tcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagc------atgacaataatatcattggttttgtatgttgtgcagtatt 17441146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 31499199 - 31499340
Alignment:
Q  86 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 185  Q
    |||||| || |||| |||||||||||||||| |||||||| | || |||||||| | |||| ||||||||| |||||||   ||||| ||||  ||||||    
T  31499199 gattcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgac 31499298  T
Q  186 aatgacaataatatcattggtattgtatgttgtgcagcattt 227  Q
    ||| ||||||||||||||||  ||||||||||||||| ||||    
T  31499299 aataacaataatatcattggctttgtatgttgtgcagtattt 31499340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 31472695 - 31472827
Alignment:
Q  87 attcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgaca 186  Q
    ||||| || |||| ||||||||||||||||||||||||| ||||||||||||  | |||| |||| |||| | |||||   ||||| |||| ||||||||    
T  31472695 attcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgaca 31472794  T
Q  187 atgacaataatatcattggtattgtatgttgtg 219  Q
    || |||||||||||||||||  | |||||||||    
T  31472795 ataacaataatatcattggttgtatatgttgtg 31472827  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 31479154 - 31479285
Alignment:
Q  88 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 187  Q
    ||||||| |||| |||||| |||||||| ||||||||| ||||||||||||| | |||| ||| ||||| ||||||    ||||| |||| ||| |||||    
T  31479154 ttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaa 31479253  T
Q  188 tgacaataatatcattggtattgtatgttgtg 219  Q
    | ||||||||||| ||||   |||||||||||    
T  31479254 taacaataatatcgttggctgtgtatgttgtg 31479285  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 31148161 - 31148108
Alignment:
Q  86 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagag 139  Q
    ||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||    
T  31148161 gattcaaattgttactccgggaagtgaaataccaagttggttcaacaatcagag 31148108  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 31157082 - 31156951
Alignment:
Q  91 aaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatga 190  Q
    |||| |||| ||| |||||||||||||||| |||| |||||||||||||   |||| ||||||||  ||| ||||  ||||  |||| | |  |||||||    
T  31157082 aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga 31156983  T
Q  191 caataatatcattggtattgtatgttgtgcag 222  Q
    |||| || ||||||| ||||  ||||||||||    
T  31156982 caatgatttcattggcattgcttgttgtgcag 31156951  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 31504269 - 31504311
Alignment:
Q  30 atgacacttttatggatgaaacaattcattaaggcaaacccac 72  Q
    |||||| ||| |||||||| |||||||||||||||||||||||    
T  31504269 atgacattttcatggatgatacaattcattaaggcaaacccac 31504311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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