View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_49 (Length: 378)

Name: NF16735_low_49
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_49
NF16735_low_49
[»] chr4 (1 HSPs)
chr4 (1-224)||(9368155-9368381)
[»] chr5 (2 HSPs)
chr5 (1-226)||(22377460-22377697)
chr5 (168-226)||(21116924-21116982)
[»] chr3 (3 HSPs)
chr3 (269-362)||(49985040-49985133)
chr3 (79-197)||(41929532-41929656)
chr3 (236-277)||(49984669-49984710)
[»] scaffold0077 (6 HSPs)
scaffold0077 (98-197)||(51094-51197)
scaffold0077 (98-197)||(60842-60945)
scaffold0077 (1-54)||(50749-50801)
scaffold0077 (1-54)||(60497-60549)
scaffold0077 (152-197)||(51294-51339)
scaffold0077 (152-197)||(61042-61087)
[»] scaffold0039 (1 HSPs)
scaffold0039 (185-226)||(79980-80021)
[»] chr7 (1 HSPs)
chr7 (185-226)||(23651578-23651619)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9368381 - 9368155
Alignment:
Q  1 taagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcagttaacaaatttttcccttgcatcagttacatgaagttacttctga 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||    
T  9368381 taagttgcaattgtttcaaggtttaaacgtacctgcagttttctttttcttgcggtaaacaaatttttcccttgcaccagttacgtgaagttacttctga 9368282  T
Q  101 agttattcttttttg---tttattttaaattaaaaatgaagttaaagtgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggctaca 197  Q
    |||||||||||||||   ||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9368281 agttattcttttttgttttttttttttaaataaaaatgaagttaaagtgagtaaattagagtaacctttgagggtaattatgaaagtaaattaggctaca 9368182  T
Q  198 ttaaaacaaaagtattgactttattaa 224  Q
       |||||||||||||| |||||||||    
T  9368181 ccgaaacaaaagtattgcctttattaa 9368155  T

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Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22377460 - 22377697
Alignment:
Q  1 taagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcagttaacaaatttttcccttgcatcagttacatgaagttacttctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||    
T  22377460 taagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcggttaacaaattttttccttacaccagttacatgaagttacttctga 22377559  T
Q  101 agttattcttttttg-----------tttattttaaattaaaaatgaagtt-aaagtgagtaaattagagtaaccgttgagggtaattatggaagtaaat 188  Q
    |||||||||||||||           ||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22377560 agttattcttttttgttttttttgtttttttttttaaataaaaatgaagttaaaagtgagtaaattagagtaaccgttgagggtaattatggaagtaaat 22377659  T
Q  189 taggctacattaaaacaaaagtattgactttattaata 226  Q
    || ||||||  |||||||||||||||||||||||||||    
T  22377660 tatgctacaccaaaacaaaagtattgactttattaata 22377697  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 21116924 - 21116982
Alignment:
Q  168 agggtaattatggaagtaaattaggctacattaaaacaaaagtattgactttattaata 226  Q
    |||||| || ||||||  ||||||||||||  ||||||||||||||| |||||||||||    
T  21116924 agggtatttttggaagctaattaggctacaccaaaacaaaagtattgcctttattaata 21116982  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 49985040 - 49985133
Alignment:
Q  269 taaaaataaaaggtttgacttatcaaccaatatgacctgggcttgactcagacttaggtaggcccagccgcccacacgaaaagtataaatagga 362  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49985040 taaaaataaaaggtttgacttatcaaccaatatgacatgggcttgactcagacttatgtaggcccagccgcccacacgaaaagtataaatagga 49985133  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 41929656 - 41929532
Alignment:
Q  79 agttacatgaagttacttctgaagttattcttttttgtttatttt------aaattaaaaatgaagttaaagtgagtaaattagagtaaccgttgagggt 172  Q
    |||||| ||||||||| | ||||||||||||||||||||| ||||      ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  41929656 agttacgtgaagttacatatgaagttattcttttttgttttttttttttttaaaataaaaatgaagttaaagtgagtaaattagagtaaccattgagggt 41929557  T
Q  173 aattatggaagtaaattaggctaca 197  Q
    |||||||||||||||||||||||||    
T  41929556 aattatggaagtaaattaggctaca 41929532  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 49984669 - 49984710
Alignment:
Q  236 atttaaatattaaaagaagtatgactttagtaataaaaataa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49984669 atttaaatattaaaagaagtatgactttagtaataaaaataa 49984710  T

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Target: scaffold0077 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 51094 - 51197
Alignment:
Q  98 tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc 193  Q
    ||||||||||||||||| ||| |||||  | | |||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  51094 tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc 51193  T
Q  194 taca 197  Q
    ||||    
T  51194 taca 51197  T

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Target: scaffold0077; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 60842 - 60945
Alignment:
Q  98 tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc 193  Q
    ||||||||||||||||| ||| |||||  | | |||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  60842 tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc 60941  T
Q  194 taca 197  Q
    ||||    
T  60942 taca 60945  T

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Target: scaffold0077; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 50749 - 50801
Alignment:
Q  1 taagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgca 54  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  50749 taagttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgca 50801  T

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Target: scaffold0077; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 60497 - 60549
Alignment:
Q  1 taagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgca 54  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  60497 taagttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgca 60549  T

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Target: scaffold0077; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 51339 - 51294
Alignment:
Q  152 attagagtaaccgttgagggtaattatggaagtaaattaggctaca 197  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  51339 attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca 51294  T

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Target: scaffold0077; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 61087 - 61042
Alignment:
Q  152 attagagtaaccgttgagggtaattatggaagtaaattaggctaca 197  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  61087 attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca 61042  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 80021 - 79980
Alignment:
Q  185 aaattaggctacattaaaacaaaagtattgactttattaata 226  Q
    |||||||||||||  ||||||||||||||| |||||||||||    
T  80021 aaattaggctacaccaaaacaaaagtattgcctttattaata 79980  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 23651619 - 23651578
Alignment:
Q  185 aaattaggctacattaaaacaaaagtattgactttattaata 226  Q
    |||||||||||||  ||||||||||||||| |||||||||||    
T  23651619 aaattaggctacaccaaaacaaaagtattgcctttattaata 23651578  T

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