View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_5 (Length: 635)
Name: NF16735_low_5
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 38 - 617
Target Start/End: Original strand, 11018213 - 11018792
Alignment:
| Q |
38 |
acaaccacctttggttgtgaatcttttccatctattactttccatcacattcctcctatttcattcccagttacactcccacctcatatagtcccacttg |
137 |
Q |
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| T |
11018213 |
acaaccacctttggttgtgaatcttttccatctattactttccatcacattcctcctatttcattcccagttacactcccacctcatatagtcccacttg |
11018312 |
T |
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| Q |
138 |
aagtttgtggtcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
237 |
Q |
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| T |
11018313 |
aagtttgtggtcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
11018412 |
T |
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| Q |
238 |
cacaaaccaaatcacttcaactcttgatataccaacttactttttctacacttcaggagcttcaactcttgctgtttttcttcaacttccaaccattcat |
337 |
Q |
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| T |
11018413 |
cacaaaccaaatcacttcaactcttgatataccaacttactttttctacacttcaggagcttcaactcttgctgtttttcttcaacttccaaccattcat |
11018512 |
T |
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| Q |
338 |
caaagtaccacaaaatcgcttaaagagtttcacatgtatcctagaatccctgggctaccattggttcctatagttgatatgcccgatgaagtgaaggatc |
437 |
Q |
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| T |
11018513 |
caaagtaccacgaaatcgcttaaagagtttcacatgtatcctagaatccctgggttaccattggttcctatagttgatatgcccgatgaagtgaaggatc |
11018612 |
T |
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| Q |
438 |
gcgagagtaaaagttacaaggttttcttagatatggcgacaagtatgagggaaagtgatggagttatcataaacactttcgatgccattgaaggaagagc |
537 |
Q |
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| T |
11018613 |
gtgagagtaaaagttacaaggttttcttagatatggcgacaagtatgagggaaagtgatggagttatcataaacactttcgatgccattgaaggaagagc |
11018712 |
T |
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| Q |
538 |
tgcaaaagctttaaaagcagggttgtgtctaccagaaggaacaacacctccattgttttgtattggaccaatgatttcac |
617 |
Q |
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| T |
11018713 |
tgcaaaagctttaaaagcagggttgtgtctaccagaaggaacaacacctccattgttttgtattggaccaatgatttcac |
11018792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 11079086 - 11079175
Alignment:
| Q |
148 |
tcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
237 |
Q |
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| T |
11079086 |
tcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatag |
11079175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 11079429 - 11079473
Alignment:
| Q |
485 |
agggaaagtgatggagttatcataaacactttcgatgccattgaa |
529 |
Q |
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| T |
11079429 |
agggaaagtgatgggattatcgtaaacactttcgatgctattgaa |
11079473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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