View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_50 (Length: 374)
Name: NF16735_low_50
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 4457584 - 4457223
Alignment:
| Q |
2 |
gtcacaagtcatcgtgtttaatgatcaaagatgacagaggaactcaattgatttaactttnnnnnnnnntgatgaactaattatcgatcttgaataaaac |
101 |
Q |
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| T |
4457584 |
gtcacaaatcatcgtgtttaatgatcaaagatgacagatgaactcaattgatttaactt-aaagaaaattgatgaactaattatcgatcttgaataaaac |
4457486 |
T |
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| Q |
102 |
aaaaacgaaattgattgattggtgcaaatttgaggacaaa----caaacgtattcactaaattattaccactgaacacattttgaattagatttaggctt |
197 |
Q |
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| T |
4457485 |
aaaaacgaaattgattgattggtacaaatttgaggacaaataaacaaacgtattcactaaattattaccactgaaaacattttgaattagatataggctt |
4457386 |
T |
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| Q |
198 |
tgacgtaaagtattgaattattgtccatgtggcccatatcttgaagttagtcaaccatctatcaaacaattaacagtattttagtatagtaacaagtaga |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4457385 |
tgatgtaaagtattgaattattgtccatgtggcccatatcttgaagttagtcaaccatctatcaaacaattaacagtattttagtatagtaacaagtaga |
4457286 |
T |
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| Q |
298 |
tcgaatatgcaaaacagcaatagaatatgcgccccagccgtttattttcattcatgatgatat |
360 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4457285 |
tcgaatatgcaatgcagcaatagaatatgcgccccagccgtttattttcattcatgatgatat |
4457223 |
T |
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