View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_51 (Length: 374)
Name: NF16735_low_51
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 10820173 - 10819816
Alignment:
| Q |
1 |
ataaaagagaatagagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820173 |
ataaaagagaatagagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattt |
10820074 |
T |
|
| Q |
101 |
tgcattccatcaccgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820073 |
tgcattccatcaccgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtct |
10819974 |
T |
|
| Q |
201 |
tgtattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagactt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819973 |
tgtattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagactt |
10819874 |
T |
|
| Q |
301 |
agactgcaaaagcttcctttcatgcacagaaaaccaatttggaagtgacccttcttct |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10819873 |
agactgcaaaagcttcctttcatgcacagaaaaccaatttggaagtgacccttcttct |
10819816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 1630119 - 1630463
Alignment:
| Q |
14 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1630119 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcac |
1630218 |
T |
|
| Q |
114 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
213 |
Q |
| |
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| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
1630219 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
1630318 |
T |
|
| Q |
214 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagc |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
1630319 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
1630418 |
T |
|
| Q |
314 |
ttcctttcatgcacagaaaaccaatttggaagtgacccttcttct |
358 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
1630419 |
ttcctttcatgcacagaaaaccaatttgaaaatgacccttcttct |
1630463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 1607130 - 1607467
Alignment:
| Q |
21 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaa |
120 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
1607130 |
aatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccag |
1607229 |
T |
|
| Q |
121 |
cataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagca |
220 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
1607230 |
cataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagca |
1607329 |
T |
|
| Q |
221 |
gcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttccttt |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||||||||||||| |
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|
| T |
1607330 |
gcatttaaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttccttt |
1607429 |
T |
|
| Q |
321 |
catgcacagaaaaccaatttggaagtgacccttcttct |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
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| T |
1607430 |
catgcacagaaaaccaatttggaaatgacccttcttct |
1607467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 1624151 - 1624488
Alignment:
| Q |
21 |
aatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaa |
120 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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|
| T |
1624151 |
aatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccag |
1624250 |
T |
|
| Q |
121 |
cataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagca |
220 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
1624251 |
cataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagca |
1624350 |
T |
|
| Q |
221 |
gcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttccttt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||||||||||||| |
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|
| T |
1624351 |
gcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttccttt |
1624450 |
T |
|
| Q |
321 |
catgcacagaaaaccaatttggaagtgacccttcttct |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1624451 |
catgcacagaaaaccaatttggaaatgacccttcttct |
1624488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 18785179 - 18785514
Alignment:
| Q |
23 |
tataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaaca |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
123 |
taatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagcagc |
222 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
223 |
atttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttcctttca |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttca |
18785478 |
T |
|
| Q |
323 |
tgcacagaaaaccaatttggaagtgacccttcttct |
358 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18785479 |
tgcatagaaaaccaatttggaaatgacccttcttct |
18785514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 12803394 - 12803539
Alignment:
| Q |
41 |
gcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacataatgttatcatt-atga |
139 |
Q |
| |
|
||||||||||| || ||||||||| |||||||| ||||| ||||||||| | |||||| |||||||||| ||||||||||| |||||||| || |
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|
| T |
12803394 |
gcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatattatcattcatct |
12803493 |
T |
|
| Q |
140 |
acagcaacctcaatgttctctttataaacacctttcttcacatgtat |
186 |
Q |
| |
|
| ||||| |||| |||||| |||||||||||||||||||| |||| |
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|
| T |
12803494 |
tc-ccaaccacaatattctctctataaacacctttcttcacacgtat |
12803539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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