View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_52 (Length: 372)
Name: NF16735_low_52
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 45130698 - 45131037
Alignment:
| Q |
17 |
atgtagaagttccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctac |
116 |
Q |
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| T |
45130698 |
atgtagaagttccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttgctgcaagctac |
45130797 |
T |
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| Q |
117 |
caatgtacattttggtgcaagacctgatctcaaaagtaagtgaggcggggtaattttatatatattattgagnnnnnnnnnnattgttgtgtgtaaattg |
216 |
Q |
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| T |
45130798 |
caatgtacattttggtgcaagacctgatctcaagagtaagtgaggcggggtaattttatatatattattgag--ttttttttattgttgtgtgtaaattg |
45130895 |
T |
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| Q |
217 |
ggtatcctccatacgcagctgcagagactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattc |
316 |
Q |
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| T |
45130896 |
ggtatcctccatacgcagctgcagagactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattc |
45130995 |
T |
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| Q |
317 |
tgtttgagtgtaaagacaaagatgttggagttatggtctgtg |
358 |
Q |
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| T |
45130996 |
tgtttgagtgtaaagacaaagatgttggagttatggtttgtg |
45131037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 45113794 - 45113950
Alignment:
| Q |
17 |
atgtagaagttccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctac |
116 |
Q |
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| T |
45113794 |
atgtagaagtttcaacaccagcaagatcaccagggtcatggatttatggttcagaaagagagcttgagagccttcctcatcaatctttagtgcaagctac |
45113893 |
T |
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| Q |
117 |
caatgtacattttggtgcaagacctgatctcaaaagtaagtgaggcggggtaatttt |
173 |
Q |
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| T |
45113894 |
caatgtacattttggctcaagacctgatctcaagagtaagtgaggcagggtaatttt |
45113950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 45114071 - 45114129
Alignment:
| Q |
293 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatg |
351 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatg |
45114129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 11593380 - 11593427
Alignment:
| Q |
110 |
aagctaccaatgtacattttggtgcaagacctgatctcaaaagtaagt |
157 |
Q |
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| T |
11593380 |
aagctaccaatgtgcattatggtgaaagacctgatcttaaaagtaagt |
11593427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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