View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_56 (Length: 359)
Name: NF16735_low_56
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_56 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 7236188 - 7236535
Alignment:
| Q |
16 |
aaaatcaggtactatatatcaacattatagttctacattgtagttatggttacgatgtgaaccttaatattacgccaaaatgctagcaaatgaggcc--- |
112 |
Q |
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| T |
7236188 |
aaaatcaggtactatatatcaacattatagttctacattgtagttatggttacgatgtgaaccttaatattacgccaaaatgctagcaatttagaactat |
7236287 |
T |
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| Q |
113 |
gcaattgtatgttgt-tgtaaggacctctaaaagttatgtattgtgattgtaattacggtcgcataccacaatttagaactatgcaactaaaccaattat |
211 |
Q |
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| T |
7236288 |
gcaactaaaccaattatgtaaggacctctaaaagttatgtattgtgattgtaattacggtcgcataccacaatttagaactatgcaactaaaccaattat |
7236387 |
T |
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| Q |
212 |
tggtgttcaaactctaagcttacctacttattaacttgtgttttgagaaccagacgagccggttcaactagttgagttcgtaactggtcaataagtagat |
311 |
Q |
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| T |
7236388 |
tggtgttcaaaatctaagcttacatacatattaactggtgttttgagaaccagacgagctggatcaactagttgagttcgtaactggtcaataagtagat |
7236487 |
T |
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| Q |
312 |
tgaccaaccgcgatcaattctcagtatcttaaaacatggttcaacaac |
359 |
Q |
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| T |
7236488 |
tgaccaaccgcgatcaattctcagtatcttaaaacatggttcaacaac |
7236535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 49591661 - 49591619
Alignment:
| Q |
68 |
cgatgtgaaccttaatattacgccaaaatgctagcaaatgagg |
110 |
Q |
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| T |
49591661 |
cgatgtgaaccttaatattgcgccaaaatgctaacaaatgagg |
49591619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 49591611 - 49591549
Alignment:
| Q |
274 |
ttcaactagttgagttcgtaactggtcaataagtagattgaccaaccgcgatcaattctcagt |
336 |
Q |
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| T |
49591611 |
ttcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagt |
49591549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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