View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_67 (Length: 312)
Name: NF16735_low_67
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 51577878 - 51577608
Alignment:
| Q |
1 |
ttcaatttcaaaactctct----ctctgatctgcccccaccaagcaagcagctatcttgaaattcaagtaagaatttctcacacaaaaagctctcaatca |
96 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51577878 |
ttcaatttcaaaactctctctctctctgatctgcccccaccaagcaagcagctatcttgaaattcaagtaagaatttctcacacaaaaagctctcaatca |
51577779 |
T |
|
| Q |
97 |
atcttcatcatcacaattcacaacactttttcactcacacccaaacaaggaaccaaaaccccacttcacacgcacagataaagtttcaaactttaccccc |
196 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51577778 |
atcttcatcatcacaattcacaacactttttcact--cacccaaacaagtaaccaaaaccccacttcacacgcacagataaagtttcaaactttaccccc |
51577681 |
T |
|
| Q |
197 |
caccccactttcttaaaacttcttccaataatcttcttccgttttaatttattataataatcatcaaatcaaat |
270 |
Q |
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|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51577680 |
caccccac-ttcttaaaatttcttccaataatcttcttccgttttaatttattataataatcatcaaatcaaat |
51577608 |
T |
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