View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_68 (Length: 308)
Name: NF16735_low_68
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 29690949 - 29690684
Alignment:
| Q |
21 |
ggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaa |
120 |
Q |
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| T |
29690949 |
ggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaa |
29690850 |
T |
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| Q |
121 |
tgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagat |
220 |
Q |
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| T |
29690849 |
tgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagat |
29690750 |
T |
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| Q |
221 |
attttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtg |
286 |
Q |
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| T |
29690749 |
attttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtg |
29690684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 29718461 - 29718196
Alignment:
| Q |
21 |
ggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaa |
120 |
Q |
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| T |
29718461 |
ggcgagagaggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaa |
29718362 |
T |
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| Q |
121 |
tgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagat |
220 |
Q |
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| T |
29718361 |
tgttgtaacggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagat |
29718262 |
T |
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| Q |
221 |
attttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtg |
286 |
Q |
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| T |
29718261 |
attttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtg |
29718196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 30827877 - 30827987
Alignment:
| Q |
178 |
agggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttg--tagcgggagaggtcgagggaag |
275 |
Q |
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| T |
30827877 |
agggagtttgagtgatgtgagttgtttcaatgggaaattagagattttgatgagaagttcgtcgagtggatacttgtatagtgggagaggtcgagggagg |
30827976 |
T |
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| Q |
276 |
tgaggttggtg |
286 |
Q |
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| T |
30827977 |
tgagattggtg |
30827987 |
T |
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