View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_69 (Length: 306)
Name: NF16735_low_69
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_69 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 3142100 - 3141941
Alignment:
| Q |
12 |
tactttcgcagatatatacaattaaaatcggcaacgagtttggtgcaaatatttgacgaaattttgtatataatttttaataaaaatattacatttatgc |
111 |
Q |
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| T |
3142100 |
tactttcgcagatatatacaattaaaatcggcaacgagtttggtgcaaatatttgacgaagttttgtatataatttttaataaaaatattacatttatgc |
3142001 |
T |
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| Q |
112 |
tgattattttcatttactatctttaaacatttctaaatatttccaatataattttatttt |
171 |
Q |
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| T |
3142000 |
tgattattttcatttagtatctttaaacatttctaaatatatccaatataattttatttt |
3141941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 3141870 - 3141816
Alignment:
| Q |
242 |
cgtaatactacacgacccgtaca----agtgcactggtttttactagtatatact |
292 |
Q |
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| T |
3141870 |
cgtaatactacacgacccgtacatacaagtgcactggtttttactagtatatact |
3141816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 3592760 - 3592892
Alignment:
| Q |
15 |
tttcgcagatatatacaattaaaatcggcaacgagtttggtgcaaatatttgacgaaattttgtatataa---tttttaataaaaatattacatttatgc |
111 |
Q |
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| T |
3592760 |
tttcgcaaatataaacaaataaaatctgcaacgagcacggtgcaaatatttaacgaatttttacatataacttttattaataaaaacattacattaatgt |
3592859 |
T |
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| Q |
112 |
tgattattttcatttactatctttaaacatttc |
144 |
Q |
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| T |
3592860 |
tgataacttttatttattatcttttaatatttc |
3592892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 13699013 - 13698958
Alignment:
| Q |
87 |
tttaataaaaatattacatttatgctgattattttcatttactatctttaaacatt |
142 |
Q |
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| T |
13699013 |
tttaataaaaaaattatattaatgctgataatttttatttaatatctttaaacatt |
13698958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 24504518 - 24504441
Alignment:
| Q |
87 |
tttaataaaaatattacatttatgctgattattttcatttactatctttaaacatttctaaatatttccaatataatt |
164 |
Q |
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| T |
24504518 |
tttaataaaaatattatattaatgcagataatttttatttaatatctttgaaaatttcaaaattttaccaatttaatt |
24504441 |
T |
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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 77279 - 77222
Alignment:
| Q |
87 |
tttaataaaaatattacatttatgctgattattttcatttactatctttaaacatttc |
144 |
Q |
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| T |
77279 |
tttaataaaaatattaccttaatgttgacaattttcgtttagtatctttaaacatttc |
77222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 18615251 - 18615195
Alignment:
| Q |
87 |
tttaataaaaatattacatttatgctgattattttcatttactatctttaaacattt |
143 |
Q |
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| T |
18615251 |
tttaatagaaatcttacattaataatgataattttcatttaatatctttaaacattt |
18615195 |
T |
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