View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_7 (Length: 609)
Name: NF16735_low_7
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 14 - 575
Target Start/End: Complemental strand, 49272090 - 49271529
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49272090 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacacac |
49271991 |
T |
|
| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271990 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
49271891 |
T |
|
| Q |
214 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271890 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagca |
49271791 |
T |
|
| Q |
314 |
ctggtggtacggctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtccctctgt |
413 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271790 |
ctggtggtgcagctggggatcttgttagcaagttcaagattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtccctctgt |
49271691 |
T |
|
| Q |
414 |
tcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaaccttactatgttaga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271690 |
tcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaaccttactatgttaga |
49271591 |
T |
|
| Q |
514 |
tttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgta |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271590 |
tttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgtgtaactgta |
49271529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 566
Target Start/End: Complemental strand, 49278013 - 49277455
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
49278013 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggctgacaatggaggcataacattaggacaaac |
49277914 |
T |
|
| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || || ||| | || || ||||||| || || | | ||||||||||||||||||| |
|
|
| T |
49277913 |
aagaaacaaaacatgccctcttgatgttatccgtaaccctgaagccattggctcgccagtttatttctatgaatatgaacatgattacattccaactctc |
49277814 |
T |
|
| Q |
214 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgg------gttttggtttg |
307 |
Q |
| |
|
||||| |||||| |||||||||| || ||||||||||||||| ||| ||||||||||| | ||| ||| | || || | ||||||||||| |
|
|
| T |
49277813 |
actgatctcaccgttgagattccaatattgggtagtccttgcagtgagagaaaagtgtggaagatttcaaaagagggaactagagctaggttttggtttg |
49277714 |
T |
|
| Q |
308 |
tgagcactggtggtacggctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtcc |
407 |
Q |
| |
|
||||||| |||||| ||||| | ||| ||||| |||| || ||||||||||||| || ||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
49277713 |
tgagcaccggtggttttcctgggaacctttttagccagtttaagattgagaggcttgagggagaacatgcttatgagatttatagctttctgtactgtcc |
49277614 |
T |
|
| Q |
408 |
ctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaaccttactat |
507 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
49277613 |
ttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaagaaccttattat |
49277514 |
T |
|
| Q |
508 |
gttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgt |
566 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||| |||| |
|
|
| T |
49277513 |
gttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgt |
49277455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 112 - 534
Target Start/End: Complemental strand, 49269544 - 49269119
Alignment:
| Q |
112 |
acaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactc |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| | | | ||||| | || ||||| ||||||||| ||||| || | |||||||||||| |
|
|
| T |
49269544 |
acaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaagaactcggctcgccagtgtacttctctgcaccaggttttaaacacattccaactc |
49269445 |
T |
|
| Q |
212 |
tcactgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgag |
311 |
Q |
| |
|
||||| || ||||| | |||| || | ||||| | ||||| | ||||||||| || ||||| ||| | || |||||||| |||||| |||| |
|
|
| T |
49269444 |
aaactgatctttccattaaaattcgatttaggagtagttcatgcaaccagtcaaaagtgttgaagctttcaaaagagggatctgggttctggtttttgag |
49269345 |
T |
|
| Q |
312 |
cactggtggtacggctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtccctct |
411 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||| ||||||| ||||| ||| || || | || |||| ||||||||||||||| ||| |
|
|
| T |
49269344 |
cactggtggtgtagctggggatgttgttagtaagttcaagattgagaagcttgaaggagacactgggattccaatctatatctttaagttctgtccttct |
49269245 |
T |
|
| Q |
412 |
gttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattga---agaaccttactatg |
508 |
Q |
| |
|
|||||||||| | | |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||| |
|
|
| T |
49269244 |
gttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaaccttattatg |
49269145 |
T |
|
| Q |
509 |
ttagatttcagaaggcttccactttt |
534 |
Q |
| |
|
|||| ||||||| || |||||||||| |
|
|
| T |
49269144 |
ttaggtttcagagggtttccactttt |
49269119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University