View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_71 (Length: 304)
Name: NF16735_low_71
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 49272479 - 49272196
Alignment:
| Q |
1 |
atcattattcacaagtcaacgtgatgaagggatatcataccaagtccattgtggatgaagatgctgtttatttttctatcaacgtgttccacgaagttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49272479 |
atcattattcacaagtcaacgtgatgaagggataccataccaagtccattgtggatgaagatgctgtttatttttctatcaacgtgttccacgaagttcc |
49272380 |
T |
|
| Q |
101 |
caaaatttcattttaaactagtaccgcgtggcgctcatggcaaatatataatatcactaacttaattttttataccatcactccataaacatgtccaaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49272379 |
caaaatttcattttaaactagtaccgcgtggcgctcatggcaaatatataatatcactaacttaattttttataccatcactccataaacatgtccaaat |
49272280 |
T |
|
| Q |
201 |
taaacctgacatgcttctctatataaacaatcatacaattaacttagaaagacacaacataaacatcacaatctacaaacaatc |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49272279 |
taaacctgacatgcttctctatataaacaatcatacaattaacttagaaagacacaacataaacatcacaatctacaaacaatc |
49272196 |
T |
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