View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_77 (Length: 286)
Name: NF16735_low_77
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_77 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16993243 - 16992977
Alignment:
| Q |
1 |
acattaaacgaatacaagttgtttcttgttcttgtttggnnnnnnnnnngttgttgttgtttgtgatggctggtttttctagcaagaatgtaccgttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16993243 |
acattaaacgaatacaagttgtttcttgttcttgtttggttttttt---gttgttgttgtttgtgatggctggtttttctagcaagaatgttccgttatt |
16993147 |
T |
|
| Q |
101 |
cggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaagagtgatgaagaagataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16993146 |
cggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaagagtgatgaagaagataag |
16993047 |
T |
|
| Q |
201 |
ggtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgcagatg |
270 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16993046 |
ggtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgcagatg |
16992977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 16824980 - 16824899
Alignment:
| Q |
102 |
ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaaga |
183 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||| ||| | || ||||| |||||||||||| |||||||||| |
|
|
| T |
16824980 |
ggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccacttgttgggtcatcaaaacggagaaaga |
16824899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 10600805 - 10600871
Alignment:
| Q |
158 |
tggtgggtcatcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttct |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| | |||| || | | ||||||||||| |
|
|
| T |
10600805 |
tggtggttcatcaaagcggagaaagagtgatgaagatgatatgagttttgactctctttctggttct |
10600871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 16969450 - 16969404
Alignment:
| Q |
106 |
tttcgagcagaactcgtagcaagaatgttccgttgtttggttctctt |
152 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||| |||| |
|
|
| T |
16969450 |
tttctagcagaactcgtagcaaaaatgttccattgtttggttgtctt |
16969404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 17008759 - 17008718
Alignment:
| Q |
112 |
gcagaactcgtagcaagaatgttccgttgtttggttctcttt |
153 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
17008759 |
gcagaactcgtagcaaaaatgtgccattgtttggttctcttt |
17008718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 17008878 - 17008845
Alignment:
| Q |
113 |
cagaactcgtagcaagaatgttccgttgtttggt |
146 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
17008878 |
cagaactcgtagcaagaatgttccattgtttggt |
17008845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 102 - 270
Target Start/End: Original strand, 35262170 - 35262338
Alignment:
| Q |
102 |
ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaagagtgatgaagaagataagg |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35262170 |
ggtgtttctagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtgatgaagaagataagg |
35262269 |
T |
|
| Q |
202 |
gtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgcagatg |
270 |
Q |
| |
|
| ||||| ||||||||| ||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35262270 |
ggttggactatgtttctcgttctaaaaaaaggaagatgaacgaagaaccttttgttgttcctgcagatg |
35262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 35262149 - 35262182
Alignment:
| Q |
51 |
ttgttgttgtttgtgatggctggtttttctagca |
84 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
35262149 |
ttgttgttgtttgtgatggctggtgtttctagca |
35262182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University