View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_78 (Length: 277)
Name: NF16735_low_78
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_78 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 33617232 - 33617476
Alignment:
| Q |
33 |
tagtattatactattatggtacaatgtttttataatcatcggataaccattgcccaaataggatagactatgagaaagatgatgccaagtgtgttagata |
132 |
Q |
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| T |
33617232 |
tagtattatactattatggtacaacgtttttataatcatcggataaccattgcccaaataggatagactatgagaaagatgatgccaagtgtgttagata |
33617331 |
T |
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| Q |
133 |
ttccatgtctttgtgtgaaagaatttctgaatccaccagtagctctaatatgttcttgtagcaggtaacaaccaatgaaaagatcaattgctactccaat |
232 |
Q |
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| T |
33617332 |
ttccatgtctttgtgtgaaagaatttctgaatccaccagtagctctaatatgttcttgtagcaggtaacaaccaatgaaaagatcaattgctactccaat |
33617431 |
T |
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| Q |
233 |
ccaattgttcctaaactttatagcaaacaagtcaggggttactgt |
277 |
Q |
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| T |
33617432 |
ccaattgttcctaaactttatagcaaacaaatcaggggttactgt |
33617476 |
T |
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