View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_8 (Length: 583)
Name: NF16735_low_8
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 780035 - 779672
Alignment:
| Q |
19 |
gatggattgtctaggtcattagctttatagcacatacacttatgatagatgacgtctatgatgtctaacatgtgtcggacaaattaaatgtgataagttc |
118 |
Q |
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| T |
780035 |
gatggattgtctaggtcattagctttatagcacatacacttatgatagatgacgtctatgatgtctaacatgtgtcggacaact-----gtgataagttc |
779941 |
T |
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| Q |
119 |
aataaactcattcgcttattaatttttacgtgtcttaagtccgtaacggtgtttcatagatcattatcctattgactatgactctccattacaat-nnnn |
217 |
Q |
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| T |
779940 |
aataaactcattcgcttattaatttttacgtgtcttaagtccgtaacagtgtttcatagatcattatcctattgactatgactctccattacaataaaac |
779841 |
T |
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| Q |
218 |
nnnccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactcatgttataatcatataaaaatgtcaaacagacacaattatta |
317 |
Q |
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| T |
779840 |
aaaccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactcatgttataatcatataaaaatgtcaaacagacacaattgtta |
779741 |
T |
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| Q |
318 |
tcattcatnnnnnnnnnnttcaaaaatactcaacaagacatcaataacacaaggatcatgactaatagtt |
387 |
Q |
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| T |
779740 |
tcattcat-aaaaaaacattctaaaatactcaacaagacatcaataacacaaggatcatgactaatagtt |
779672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 449 - 541
Target Start/End: Complemental strand, 779610 - 779518
Alignment:
| Q |
449 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
541 |
Q |
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| T |
779610 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
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