View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_80 (Length: 275)
Name: NF16735_low_80
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_80 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 30333729 - 30334004
Alignment:
| Q |
3 |
tgctgaattaatttacctattgttgtagtgt-attttctagtactatattcatcataatgtaataatttttgtgaagttcaattcatggtcaaattaaag |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30333729 |
tgctgaattaatttacctattgttgcagtgttattttctagtactatattcatcataatataataatttttgtgaagttcaattcatggtcaaattaaag |
30333828 |
T |
|
| Q |
102 |
tcaactctgaaaattgtatcaatgtgattgggatgaata-tttgttaaatttgctttgctttgcattgcaatccataacattactaatactactaa-ttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30333829 |
tcaactctgaaaattgtatcaatgtgattgggatgaatattttgttaaatttgttttgctttgcattgcaatccataacattactaatactactaatttt |
30333928 |
T |
|
| Q |
200 |
gtttttggaaattggaattaccactttgtttggttggaaaatgatagagggagaaaagaaagaggaagaaatgatt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30333929 |
gtttttggaaattggaattaccactttgtttggttggaaaatgatagagggagaaaagaaagaggaagaaatgatt |
30334004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 30322059 - 30322316
Alignment:
| Q |
7 |
gaattaatttacctattgttgtagtgta-ttttctagtactatattcatcataatgtaataatttttgtgaagttcaattcatggtcaaattaaagtcaa |
105 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||||||| ||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30322059 |
gaattattttacctattgttgcactgttgttttctagtagtatattcat---aatgtaat---ttttgtgaacttcaactcatggtcaaattaaagtcaa |
30322152 |
T |
|
| Q |
106 |
ctctgaaaattgtatcaatgtgattgggatga-ata--tttgttaaatttgctttgctttgcattgcaatccataacattactaatactactaatttgtt |
202 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| || ||||||||||||| ||| |||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
30322153 |
ctctaaaaattgtatgaaagggattgggatgagatgcgtttgttaaatttgtttttatttgca-----atccatgacattactaatacta---atttgtt |
30322244 |
T |
|
| Q |
203 |
tttggaaattggaattaccactttgtttggttggaaaatgatagagggagaaaagaaagaggaagaaatgatt |
275 |
Q |
| |
|
|||||||||| || | || |||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
30322245 |
tttggaaattagattgac-actttgtttggttggaaaatgaaagtgggaggaaagaaagaggaagaaatgatt |
30322316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 30337887 - 30337942
Alignment:
| Q |
82 |
aattcatggtcaaattaaagtcaactctgaaaattgtatcaatgtgattgggatga |
137 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
30337887 |
aattcatggtcaaactaaagtcaactttgaaaattgtatggatggaattgggatga |
30337942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University