View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_81 (Length: 272)
Name: NF16735_low_81
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 3685958 - 3686204
Alignment:
| Q |
9 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
108 |
Q |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
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| Q |
109 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
208 |
Q |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga |
3686157 |
T |
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| Q |
209 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagt |
255 |
Q |
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| T |
3686158 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagt |
3686204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
| Q |
10 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
108 |
Q |
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| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
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| Q |
109 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
208 |
Q |
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| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga |
3693924 |
T |
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| Q |
209 |
c |
209 |
Q |
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| T |
3693925 |
c |
3693925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
| Q |
28 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
126 |
Q |
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|||||||| |||| |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| |
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| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
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| Q |
127 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg |
216 |
Q |
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| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
| Q |
10 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
109 |
Q |
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| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
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| Q |
110 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat |
204 |
Q |
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| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat |
3675716 |
T |
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