View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_82 (Length: 269)
Name: NF16735_low_82
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 45762235 - 45762486
Alignment:
| Q |
1 |
tcataatccacaatttaacattaattaacaaaataatccctnnnnnnnncatatgcaatataatttattttactttcaaagtgaaaaaattaaataacgt |
100 |
Q |
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| T |
45762235 |
tcataatccacaatttaacattaattaacaagataatccctaaaaaaaacatatgcaatataatttattttactttcaaagtgaaaaaattaaataacgt |
45762334 |
T |
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| Q |
101 |
cttcgccatcctctttcctcgtacacact-------caatagaataataaacaatattgatcaaaatcatattccatcaatcggtt-cttatttatttat |
192 |
Q |
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|||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45762335 |
cttcgccatcctttttcctcgtacaaaataaactcacaatagaataataaacaatattgatcaaaatcatattccatcaatcggtttcttatttatttat |
45762434 |
T |
|
| Q |
193 |
taactattcgtgagttttatttataactatcaaagtaaagtgatgccatatactcaa |
249 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45762435 |
taactattcgtgagttttatttataactatc-----aaagtgatgccatatactcaa |
45762486 |
T |
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