View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_84 (Length: 266)

Name: NF16735_low_84
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_84
NF16735_low_84
[»] chr8 (1 HSPs)
chr8 (18-256)||(12588319-12588557)
[»] chr6 (24 HSPs)
chr6 (18-256)||(29697403-29697641)
chr6 (18-256)||(29733124-29733362)
chr6 (18-256)||(29793594-29793832)
chr6 (18-256)||(28481170-28481409)
chr6 (18-254)||(29761145-29761381)
chr6 (22-225)||(28491600-28491803)
chr6 (22-225)||(29804010-29804213)
chr6 (18-246)||(29679618-29679846)
chr6 (68-233)||(29467723-29467888)
chr6 (104-195)||(26617260-26617351)
chr6 (104-195)||(26723188-26723279)
chr6 (90-147)||(26959147-26959204)
chr6 (80-225)||(28181018-28181163)
chr6 (22-210)||(29825946-29826134)
chr6 (104-147)||(26635672-26635715)
chr6 (104-147)||(26741638-26741681)
chr6 (80-147)||(26937076-26937143)
chr6 (92-199)||(26949591-26949698)
chr6 (104-147)||(26975034-26975077)
chr6 (80-166)||(25481705-25481791)
chr6 (80-166)||(26142828-26142914)
chr6 (106-200)||(27214346-27214440)
chr6 (106-200)||(27234788-27234882)
chr6 (80-197)||(28185298-28185415)
[»] scaffold0012 (2 HSPs)
scaffold0012 (18-247)||(241757-241986)
scaffold0012 (18-248)||(214410-214640)
[»] chr3 (6 HSPs)
chr3 (18-256)||(613054-613292)
chr3 (202-234)||(23406910-23406942)
chr3 (202-234)||(23449431-23449463)
chr3 (202-234)||(23456195-23456227)
chr3 (202-234)||(23465564-23465596)
chr3 (202-234)||(23480921-23480953)
[»] chr5 (1 HSPs)
chr5 (77-147)||(16688993-16689063)
[»] chr2 (1 HSPs)
chr2 (104-210)||(17993846-17993952)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 12588557 - 12588319
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12588557 cttgtaagcaaaaggaggaagaagcataattcttagagaggacaacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 12588458  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12588457 gccttttttaatctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 12588358  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12588357 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 12588319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 29697403 - 29697641
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  ||||||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29697403 cttgtaagcaaaaggatgaagaagcataattttcagagaggacaatgatggccatcatggagtcttcaattgctttgagaagtgatggtgtgatttcttc 29697502  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||| |  ||||||||||| |||    
T  29697503 gccttttttaagctccttggcatccatgaaagttcgaactcctttgtcatcaagagctttcttgagataaccggtgaaaccatgacgagtatcctcgcct 29697602  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    | ||| |||||||||||||| ||||||||||||| ||||    
T  29697603 ctaaaactgagaaaaacatcatacttgaattgatttgtg 29697641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 29733124 - 29733362
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||| ||||||||||||||||||| ||||  |||||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  29733124 cttgtaagcaaaaggaggaagaagcataattcttagaaaggacgacgatggcgatttgggagtcttcaattgctttgagaagtgatggtgtgatttcttc 29733223  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
    |||||||| ||||||||  || ||||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||| || |||||||||||||||    
T  29733224 gcctttttgaagctcctcatcgtccatgaaagttctaactcctttgtcatctagagctttcttgagatagcttgtgaaaccataacgagtatcctcacct 29733323  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    |||||||||||||||||||| ||||||||| ||| ||||    
T  29733324 cgaaagctgagaaaaacatcatacttgaatcgatttgtg 29733362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 29793594 - 29793832
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  ||||||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  29793594 cttgtaagcaaaaggatgaagaagcataattttcagagaggacaatgatggccatcatggagtcttcaattgctttgagaagtgatggtgtgatttcatc 29793693  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
     |||||||||||||  |  ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29793694 tccttttttaagcttttcatcatcgatgaaagttcggacccctttgtcatcaagagctttcttgagattgccagtgaaaccatagcgagtatcctcacct 29793793  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  29793794 cgaaagctgaggaaaacatcgtacttgaatcgatctgtg 29793832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 28481170 - 28481409
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  ||||||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  28481170 cttgtaagcaaaaggatgaagaagcataattttcagagaggacaatgatggccatcatggagtcttcaattgctttgagaagtgatggtgtgatttcatc 28481269  T
Q  118 gcctttt-ttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacc 216  Q
     |||||| |||||||  |  ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28481270 tcctttttttaagcttttcatcatcgatgaaagttcggacccctttgtcatcaagagctttcttgagattgccagtgaaaccatagcgagtatcctcacc 28481369  T
Q  217 tcgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  28481370 tcgaaagctgaggaaaacatcgtacttgaatcgatctgtg 28481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 29761145 - 29761381
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  ||||||||||||| | |||||||| ||||||||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  29761145 cttgtaagcaaaaggatgaagaagcataattttcagagaggacaacgatggccatcatggactgttcaattgctttaagaagtgatggtgtgatttcttc 29761244  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
     ||||||   |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||| || |||    
T  29761245 accttttcgtagctccttatcatccatgaaagttcgaactcctttgtcatcaagagctttcttgagatagccagtgaaaccatggcgagtatcttcgcct 29761344  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctg 254  Q
    |  |||||||| |||||||||||||||||||||||||    
T  29761345 ctgaagctgaggaaaacatcgtacttgaattgatctg 29761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 28491600 - 28491803
Alignment:
Q  22 taagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttcgcct 121  Q
    ||||||||||||  |||||||||||||||| || || | |||||||||||| ||||| | |||||| |||||||  |||||||||||||||||||| |||    
T  28491600 taagcaaaaggaagaagaagcataattcttggaaagaacaacgatggccatgttggaattttcaatggctttgatgagtgatggtgtgatttcttcacct 28491699  T
Q  122 tttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacctcgaa 221  Q
    |||| |||||||| ||| ||||||||||| || |||||||||||||  |||||||||   ||||| ||||||||||||||||||||||||||||||||||    
T  28491700 ttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccatagatttccagtgaaaccgtagcgagtatcctcacctcgaa 28491799  T
Q  222 agct 225  Q
    ||||    
T  28491800 agct 28491803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 29804010 - 29804213
Alignment:
Q  22 taagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttcgcct 121  Q
    ||||||||||||  |||||||||||||||| || || | |||||||||||| ||||| | |||||| |||||||  |||||||||||||||||||| |||    
T  29804010 taagcaaaaggaagaagaagcataattcttggaaagaacaacgatggccatgttggaattttcaatggctttgatgagtgatggtgtgatttcttcacct 29804109  T
Q  122 tttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacctcgaa 221  Q
    |||| |||||||| ||| ||||||||||| || |||||||||||||  |||||||||   ||||| ||||||||||||||||||||||||||||||||||    
T  29804110 ttttgaagctcctcgtcgtccatgaaagtacggactcctttgtcatggagagctttccatagatttccagtgaaaccgtagcgagtatcctcacctcgaa 29804209  T
Q  222 agct 225  Q
    ||||    
T  29804210 agct 29804213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 29679618 - 29679846
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  | |||||||||||||||||||||| ||| ||||| || |  |||||||||||||| || | |||||| ||||||||||| ||    
T  29679618 cttgtaagcaaaaggatgatgaagcataattcttagagaggacaactatggcgatttgtgagtcttcaattgccttaataagtgacggtgtgatttcatc 29679717  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
     ||||| | ||| | || |||||||||||||||||  |||||||||||||| |||||||||  ||| |||||||||||||||| ||| || || || |||    
T  29679718 ccctttctgaagattctcgtcatccatgaaagttctgactcctttgtcatcaagagctttccagaggttgccagtgaaaccgtggcgggtgtcttcgcct 29679817  T
Q  218 cgaaagctgagaaaaacatcgtacttgaa 246  Q
    | |||||||||||||||||||||||||||    
T  29679818 ctaaagctgagaaaaacatcgtacttgaa 29679846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 29467888 - 29467723
Alignment:
Q  68 gccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcat 167  Q
    ||||| ||||| |||||||| |||||||  |||||||||||||||||||||||||||| ||| || |  ||||||||||| ||  ||| |||| |||||     
T  29467888 gccatgttggaatcttcaatagctttgatgagtgatggtgtgatttcttcgcctttttgaagttcttcatcatccatgaaggtgtgaattcctctgtcac 29467789  T
Q  168 ctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacctcgaaagctgagaaaaa 233  Q
      || ||||||   |||||||| |||||||| | ||||||||| || ||||  ||||| |||||||    
T  29467788 tcagtgctttccaaagattgccggtgaaaccatggcgagtatcttcgcctctgaagctaagaaaaa 29467723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 26617351 - 26617260
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaa 195  Q
    ||||||||||| || ||| | | ||||||||||||||| ||||| ||||| ||||||||||||   |||||||| | ||||||||| |||||    
T  26617351 ggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26617260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 26723279 - 26723188
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaa 195  Q
    ||||||||||| || ||| | | ||||||||||||||| ||||| ||||| ||||||||||||   |||||||| | ||||||||| |||||    
T  26723279 ggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagattgccggtgaa 26723188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 26959204 - 26959147
Alignment:
Q  90 ctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    |||||||||| || ||||||||||| || |||||||||||||| |||||||| |||||    
T  26959204 ctttgagaagcgaaggtgtgatttcatccccttttttaagctctttgtcatcaatgaa 26959147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 28181163 - 28181018
Alignment:
Q  80 tcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttct 179  Q
    |||||||| || |||| |||||||| ||| |||||||| |||  || ||||||  ||||||||||||| ||||| | ||| ||||||   |||||| | |    
T  28181163 tcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctat 28181064  T
Q  180 tgagattgccagtgaaaccgtagcgagtatcctcacctcgaaagct 225  Q
    ||||||| ||||| ||||| || ||||| ||  |||||| ||||||    
T  28181063 tgagatttccagtaaaaccataacgagtgtcaccacctctaaagct 28181018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 29826134 - 29825946
Alignment:
Q  22 taagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttcgcct 121  Q
    ||||||||| ||  |||||||||||||  ||||||  |||   ||||| ||| | || |||| |||||| || | |||||| ||||||||||| || |||    
T  29826134 taagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccct 29826035  T
Q  122 tttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatc 210  Q
     ||| |||||| |||||||| ||||| || |||| |   ||||||  ||||||||| | ||||||||| || |||||  ||||||||||    
T  29826034 ctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaaccaaagcgagtatc 29825946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 26635715 - 26635672
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  26635715 ggtgtgatttcatccccttttttaagctccttgtcatcaatgaa 26635672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 26741681 - 26741638
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  26741681 ggtgtgatttcatccccttttttaagctccttgtcatcaatgaa 26741638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 26937143 - 26937076
Alignment:
Q  80 tcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    ||||||||||| |||| ||||||||||||||||||||| |||   |  |||||||||||||| |||||    
T  26937143 tcttcaattgccttgacaagtgatggtgtgatttcttctcctccatggagctccttgtcatcaatgaa 26937076  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 26949698 - 26949591
Alignment:
Q  92 ttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccag 191  Q
    ||||| ||||| ||||||||||| || ||||| | ||||||||| ||||| ||||| ||||| | ||| ||||||   |||||||| | |||||| || |    
T  26949698 ttgaggagtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccgg 26949599  T
Q  192 tgaaaccg 199  Q
    ||||||||    
T  26949598 tgaaaccg 26949591  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 26975077 - 26975034
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  26975077 ggtgtgatttcgtccccttttttaagctccttgtcatcaatgaa 26975034  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 25481791 - 25481705
Alignment:
Q  80 tcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtca 166  Q
    |||||||| || |||| |||||||||||||||||| || ||| ||| ||| || || ||||| |||||||| |||| ||| ||||||    
T  25481791 tcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtca 25481705  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 26142914 - 26142828
Alignment:
Q  80 tcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtca 166  Q
    |||||||| || |||| |||||||||||||||||| || ||| ||| ||| || || ||||| |||||||| |||| ||| ||||||    
T  26142914 tcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtca 26142828  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 27214440 - 27214346
Alignment:
Q  106 tgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgt 200  Q
    ||||||||| || ||| | | ||||||||||||||| ||||| ||||| | ||||||||||   |||||||| | |||||| || ||||||||||    
T  27214440 tgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgt 27214346  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 27234788 - 27234882
Alignment:
Q  106 tgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgt 200  Q
    ||||||||| || ||| | | ||||||||||||||| ||||| ||||| | ||||||||||   |||||||| | |||||| || ||||||||||    
T  27234788 tgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgt 27234882  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 28185415 - 28185298
Alignment:
Q  80 tcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttct 179  Q
    |||||||| || |||| |||||||| ||| |||||||| |||  || ||||||  ||||||||||||| ||||| | ||| ||||||   |||||| | |    
T  28185415 tcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctat 28185316  T
Q  180 tgagattgccagtgaaac 197  Q
    ||||||| ||||| ||||    
T  28185315 tgagatttccagtaaaac 28185298  T

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Target: scaffold0012 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 241757 - 241986
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  241757 cttgtaagcaaaaggaggaggaagcataattcttagagaggacaacaatggccatcatggagtcttcaattgctttgagaagtgatggtgtgatttcttc 241856  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
     |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||  |||||||| | ||||||||| || |||    
T  241857 accttttctaagctccttgtcatccatgaaagttcgaattcctttgtcatcaagagctttcttgagatagcttgtgaaaccatggcgagtatcttcgcct 241956  T
Q  218 cgaaagctgagaaaaacatcgtacttgaat 247  Q
    |  ||| ||||||||||||| ||| |||||    
T  241957 ctgaagttgagaaaaacatcatacgtgaat 241986  T

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Target: scaffold0012; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 214410 - 214640
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||||||  ||||||| |||||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||||||||| ||||| ||    
T  214410 cttgtaagcaaaaggatgaagaagcgtaattcttagagaggacaactatggcgatcttggattcatcaattgccttgaaaagtgatggtgtaatttcatc 214509  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
     ||||| | |||||    |||||||||||||||||| |||||||||||||| |||||||||   ||||  || |||||||| || ||||||||||| |||    
T  214510 tcctttctgaagcttgccgtcatccatgaaagttcggactcctttgtcatcaagagctttccaaagatgaccggtgaaaccataacgagtatcctcgcct 214609  T
Q  218 cgaaagctgagaaaaacatcgtacttgaatt 248  Q
    | ||| || || || || |||||||| ||||    
T  214610 ctaaaactaaggaacacgtcgtacttaaatt 214640  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 613292 - 613054
Alignment:
Q  18 cttgtaagcaaaaggagtaagaagcataattcttagagaggataacgatggccatcttggagtcttcaattgctttgagaagtgatggtgtgatttcttc 117  Q
    ||||||||||||| ||| |||||||||| ||||||||||| | ||  ||||||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  613292 cttgtaagcaaaaagaggaagaagcatagttcttagagagaacaataatggccatcatagagtcttcaattgctttgagaagtgatggtgtaatttcttc 613193  T
Q  118 gccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagcgagtatcctcacct 217  Q
    |||||||  |||||| | ||||||||||||||| || |||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||| || |||    
T  613192 gccttttcgaagctcgtcgtcatccatgaaagtacggactcctttgtcatcaagagctttcttgagatagccggtgaaaccatagcgagtatcttcgcct 613093  T
Q  218 cgaaagctgagaaaaacatcgtacttgaattgatctgtg 256  Q
    |  || ||||  ||||| || ||||||||| ||||||||    
T  613092 ctgaaactgatgaaaacgtcatacttgaatcgatctgtg 613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23406910 - 23406942
Alignment:
Q  202 gcgagtatcctcacctcgaaagctgagaaaaac 234  Q
    |||||||||||||||||||||||| ||||||||    
T  23406910 gcgagtatcctcacctcgaaagctaagaaaaac 23406942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23449431 - 23449463
Alignment:
Q  202 gcgagtatcctcacctcgaaagctgagaaaaac 234  Q
    |||||||||||||||||||||||| ||||||||    
T  23449431 gcgagtatcctcacctcgaaagctaagaaaaac 23449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23456195 - 23456227
Alignment:
Q  202 gcgagtatcctcacctcgaaagctgagaaaaac 234  Q
    |||||||||||||||||||||||| ||||||||    
T  23456195 gcgagtatcctcacctcgaaagctaagaaaaac 23456227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23465564 - 23465596
Alignment:
Q  202 gcgagtatcctcacctcgaaagctgagaaaaac 234  Q
    |||||||||||||||||||||||| ||||||||    
T  23465564 gcgagtatcctcacctcgaaagctaagaaaaac 23465596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 23480921 - 23480953
Alignment:
Q  202 gcgagtatcctcacctcgaaagctgagaaaaac 234  Q
    |||||||||||||||||||||||| ||||||||    
T  23480921 gcgagtatcctcacctcgaaagctaagaaaaac 23480953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 16689063 - 16688993
Alignment:
Q  77 gagtcttcaattgctttgagaagtgatggtgtgatttcttcgccttttttaagctccttgtcatccatgaa 147  Q
    |||||||||||||| |||| |||||||||||||||||  || ||| | | ||| ||||||||||| |||||    
T  16689063 gagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaa 16688993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 17993846 - 17993952
Alignment:
Q  104 ggtgtgatttcttcgccttttttaagctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaaccgtagc 203  Q
    ||||||||||| || ||| | | |||||| |||||||| ||||| ||||||| ||| ||||||   |||||||| | |||||| || |||||||| || |    
T  17993846 ggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatc 17993945  T
Q  204 gagtatc 210  Q
    |||||||    
T  17993946 gagtatc 17993952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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