View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16735_low_85 (Length: 263)
Name: NF16735_low_85
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_85 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 454260 - 454506
Alignment:
| Q |
17 |
tttgatcactgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgca |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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|
| T |
454260 |
tttgatcactgtgagttccttttaaggcatgtgacatatgatcctgaacctatgcaaaatgcaattcccattaacatgtttgataatctaagttattgca |
454359 |
T |
|
| Q |
117 |
ctaaaattgtgcatgagatgtgtaaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgta |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
454360 |
ctaaaattgtatatgagatgtgtaaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttattgta |
454459 |
T |
|
| Q |
217 |
attgatcatgtatcgttagctagtgaagcatctcataataaatttga |
263 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
454460 |
attgatcatgtatcgttagctagtgcagcatctcataataaatttga |
454506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 10685610 - 10685841
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
10685610 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
10685709 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
10685710 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
10685809 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
10685810 |
gcatcggtagctagtgttgcatctcataataa |
10685841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 35744130 - 35743899
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
35744130 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
35744031 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
35744030 |
gcatggggtttgtaaaatttcgcatggtgcattgattacgattaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
35743931 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| |||| |||| |||||||||||||| |
|
|
| T |
35743930 |
gcatcggtagcaagtgttgcatctcataataa |
35743899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 18867016 - 18867247
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18867016 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaattga |
18867115 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | || ||| || |||||| ||||||||||||| | ||||||| | || |
|
|
| T |
18867116 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctagaatgaatggtttatatattttagatggttccatagtaattggtaat |
18867215 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
18867216 |
gcatcggtagctagtgttgcatctcataataa |
18867247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 26300091 - 26299909
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||||| | ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26300091 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccataaccatgtttgatagtctaggttattgcactagaattga |
26299992 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
|||| | | ||| |||||||| |||||||||| ||||| |||| | | ||| ||| || |||||||||||||||||||| |
|
|
| T |
26299991 |
acatggggtttgtaaaatttcgtatggtgcattgattacggttaaggggtctaaaatgaatggtttatacattttagatggtt |
26299909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 18856621 - 18856852
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
18856621 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctatgtatgtttgataatctaggttattgcactagaattga |
18856720 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||| | |||||||||| ||||| |||| | | || ||| || |||||| ||||||||||||| | ||||||| | || |
|
|
| T |
18856721 |
gcatggggtttgtaaaattttgcatggtgcattgattacggttaaggggtctagaatgaatggtttatatattttagatggttccatagtaattggtaat |
18856820 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
18856821 |
gcatcggtagctagtgttgcatctcataataa |
18856852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 37557970 - 37558201
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
37557970 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
37558069 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| |||||| |||| | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
37558070 |
gcatggggtttgtaaaatttcgcatggtgcattgattactattaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
37558169 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
37558170 |
gcatcggtagctagtgttgcatctcataataa |
37558201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 31398338 - 31398569
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| |||||||||||||||||||||||||||| || ||| | |
|
|
| T |
31398338 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcagtagaataga |
31398437 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| || ||||||| | || |
|
|
| T |
31398438 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttctatagtaattggtaat |
31398537 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
31398538 |
gcatcggtagctagtgttgcatctcataataa |
31398569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 28837033 - 28836851
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||| | ||||| ||| || ||| |||| || || |||| ||||||| | ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28837033 |
gtgaattccttttaaaggatgtgagatttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattga |
28836934 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
||||||| | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| |
|
|
| T |
28836933 |
gcatgaggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt |
28836851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 27448563 - 27448332
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
27448563 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga |
27448464 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
27448463 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtatagaatgaatggtttatacattttagatggttccatagtaattggtaat |
27448364 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
27448363 |
gcatcggtagctagtgttgcatctcataataa |
27448332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 33790056 - 33789964
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcacta |
119 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33790056 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcacta |
33789964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 24556930 - 24557145
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||| | ||||| | | || ||| |||| || || |||| ||||||| ||||||||||||||| | |||| |||||||||| ||||| |
|
|
| T |
24556930 |
gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttagcatgtttgatagtttaggatattgcactagaattga |
24557029 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || ||||||||||| |||||||| | ||||||| | || |
|
|
| T |
24557030 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacatttcagatggttccatagtaattggtaat |
24557129 |
T |
|
| Q |
226 |
gtatcgttagctagtg |
241 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
24557130 |
gcatcggtagctagtg |
24557145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 24597962 - 24598177
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||| | ||||| | | || ||| |||| || || |||| ||||||| ||||||||||||||| | |||| |||||||||| ||||| |
|
|
| T |
24597962 |
gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttagcatgtttgatagtttaggatattgcactagaattga |
24598061 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || ||||||||||| |||||||| | ||||||| | || |
|
|
| T |
24598062 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacatttcagatggttccatagtaattggtaat |
24598161 |
T |
|
| Q |
226 |
gtatcgttagctagtg |
241 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
24598162 |
gcatcggtagctagtg |
24598177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 257
Target Start/End: Complemental strand, 43595810 - 43595631
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt |
177 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| |||||||| | ||||| |||| | | | |
|
|
| T |
43595810 |
aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcactgattacggttaaggggtct |
43595711 |
T |
|
| Q |
178 |
aagatgtttgatttatacattttagatggttttactgtaattgatcatgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| ||| || |||||||||||||||||||| | ||||||| | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
43595710 |
agaatgaatggtttatacattttagatggttccatagtaattggtaatgcatcggtagctagtgttgcatctcataataa |
43595631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 257
Target Start/End: Complemental strand, 43628604 - 43628425
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt |
177 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| |||||||| | ||||| |||| | | | |
|
|
| T |
43628604 |
aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcactgattacggttaaggggtct |
43628505 |
T |
|
| Q |
178 |
aagatgtttgatttatacattttagatggttttactgtaattgatcatgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| ||| || |||||||||||||||||||| | ||||||| | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
43628504 |
agaatgaatggtttatacattttagatggttccatagtaattggtaatgcatcggtagctagtgttgcatctcataataa |
43628425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 33789934 - 33789866
Alignment:
| Q |
189 |
tttatacattttagatggttttactgtaattgatcatgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
|||||||||||||||||||| | ||||||| | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
33789934 |
tttatacattttagatggttccatagtaattggtaatgcatcggtagctagtgttgcatctcataataa |
33789866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 16883668 - 16883437
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
16883668 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
16883569 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
16883568 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
16883469 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
16883468 |
gcatcggtagctagtgttgcatctcataataa |
16883437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 24262669 - 24262900
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
24262669 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
24262768 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
24262769 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
24262868 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
24262869 |
gcatcggtagctagtgttgcatctcataataa |
24262900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 49090431 - 49090214
Alignment:
| Q |
25 |
ctgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaatt |
124 |
Q |
| |
|
||||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49090431 |
ctgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccttaagcatgtttgatagtctaggttattgcactagaatt |
49090332 |
T |
|
| Q |
125 |
gtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatc |
223 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| | ||||||| | |
|
|
| T |
49090331 |
aagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggttccatagtaattggta |
49090232 |
T |
|
| Q |
224 |
atgtatcgttagctagtg |
241 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
49090231 |
atgcatcggtagctagtg |
49090214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 21644778 - 21644547
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21644778 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattga |
21644679 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| || | | | ||| ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
21644678 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttgaggggtctaaaatgaatggtttatacattttagatggttccatagtaattggtaat |
21644579 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| |||||| || |||||||||||||| |
|
|
| T |
21644578 |
gcatcggtagctaatgttgcatctcataataa |
21644547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 18412399 - 18412184
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18412399 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatggtctaggttattgcactagaattga |
18412300 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | ||| ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
18412299 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctaaaatgaatggtttatacattttagatggttccatagtaattggtaat |
18412200 |
T |
|
| Q |
226 |
gtatcgttagctagtg |
241 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
18412199 |
gcatcggtagctagtg |
18412184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 21987661 - 21987479
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || | |||| ||||||| | || |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21987661 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaaacgaaatttaatttccctaagaatgtttgatagtctaggttattgcactagaattga |
21987562 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| |
|
|
| T |
21987561 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaaggatctaaaatgaatggtttatacattttagatggtt |
21987479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 9186543 - 9186706
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt |
177 |
Q |
| |
|
||||||| | ||||||||||||| | ||||||||||||||| ||||| ||||| | | ||| |||||||| |||||||||| ||||| ||||| | | | |
|
|
| T |
9186543 |
aatttccctaagcatgtttgatagtataggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtct |
9186642 |
T |
|
| Q |
178 |
aagatgtttgatttatacattttagatggttttactgtaattgatcatgtatcgttagctagtg |
241 |
Q |
| |
|
|| ||| || |||||||||||||||||||| | ||||||| | ||| |||||| ||||||| |
|
|
| T |
9186643 |
aaaatgaatggtttatacattttagatggttccatagtaattggtaatgcatcgtttgctagtg |
9186706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 5818593 - 5818710
Alignment:
| Q |
89 |
agcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttg |
187 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||| ||||| | ||| |||||| | ||| |||||| ||||| ||||| | | ||||||| || |
|
|
| T |
5818593 |
agcatgttagatagtataggttattgcactaaaattgagcatggagtttgtcaaattttgcatgatgcattcattacagttaaagggtctaagatgaatg |
5818692 |
T |
|
| Q |
188 |
atttatacattttagatg |
205 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5818693 |
gtttatacattttagatg |
5818710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 8515835 - 8515604
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
8515835 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
8515736 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
8515735 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
8515636 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
8515635 |
gcatcggtagctagtgttgcatctcataataa |
8515604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 32479081 - 32478850
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
32479081 |
gtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
32478982 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
32478981 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
32478882 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
32478881 |
gcatcggtagctagtgttgcatctcataataa |
32478850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 16263103 - 16262921
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16263103 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactaaaatttg |
16263004 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
||||| | | ||| ||||||||||||||||||| || || ||||| | | ||| ||| || |||||||||||||||||||| |
|
|
| T |
16263003 |
gcatggggtttgtaaaatttcgaatggtgcattgataacgattaaagggtctaaaatgaatggtttatacattttagatggtt |
16262921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 2673566 - 2673797
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | | ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
2673566 |
gtgaattccttttaagggatgtgaggttttttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
2673665 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
2673666 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
2673765 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
2673766 |
gcatcggtagctagtgttgcatctcataataa |
2673797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 1309612 - 1309397
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
1309612 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgatagcctaggttattgcactagaattga |
1309513 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| ||| ||| |||||||| |||||||||| ||||| |||| | | ||| ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
1309512 |
gcatgggatttgtaaaatttcgcatggtgcattgattacggttaagggatctaaaatgaatggtttatacattttagatggttccatagtaattggtaat |
1309413 |
T |
|
| Q |
226 |
gtatcgttagctagtg |
241 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
1309412 |
gcatcggtagctagtg |
1309397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 28490571 - 28490750
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt |
177 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||| | ||||| | | ||| |||||||| |||||||||| ||||| |||| | | | |
|
|
| T |
28490571 |
aatttccctaagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtct |
28490670 |
T |
|
| Q |
178 |
aagatgtttgatttatacattttagatggttttactgtaattgatcatgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| ||| || |||||||||||||||||||| ||||||| | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
28490671 |
agaatgaatggtttatacattttagatggttccttagtaattggtaatgcatcggtagctagtgttgcatctcataataa |
28490750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 3324882 - 3325097
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||| | ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| | |||||||||| |||| ||||| |
|
|
| T |
3324882 |
gtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtataggttattgtactagaattga |
3324981 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||| || |||||||||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| || ||||||| | || |
|
|
| T |
3324982 |
gcatggggtttgtaaaatctcacatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggttctatagtaattggtaat |
3325081 |
T |
|
| Q |
226 |
gtatcgttagctagtg |
241 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
3325082 |
gcatcggtagctagtg |
3325097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 9603245 - 9603330
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaatta |
163 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||| | | ||| ||||||| |||||||||| |||| |
|
|
| T |
9603245 |
aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcacatggtgcattgatta |
9603330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 19348019 - 19347788
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
19348019 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
19347920 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
19347919 |
gcatggggtttgtaaaatttcgcatggtgcattgattacgattaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
19347820 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
19347819 |
gcatcggtagctagtgttgcatctcataataa |
19347788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 25394575 - 25394529
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattg |
125 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
25394575 |
aatttccctaagcatgtttgatagtctaggttattgcactagaattg |
25394529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 15655 - 15886
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
15655 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
15754 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
15755 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
15854 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
15855 |
gcatcggtagctagtgttgcatctcataataa |
15886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 24432667 - 24432898
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||| ||||||| |||||||||||| |||| ||||| |
|
|
| T |
24432667 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatatttgatagtctaggttattgtactagaattga |
24432766 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| ||| |||||||||||||||||||| | ||||||| | || |
|
|
| T |
24432767 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgattggtttatacattttagatggttccatagtaattggtaat |
24432866 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| ||| ||||||||| || | |||||||||| |
|
|
| T |
24432867 |
gcatcagtagctagtgtagtacctcataataa |
24432898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 33332422 - 33332560
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
33332422 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgataatctaggttattgcactagaataga |
33332521 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattac |
164 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |
|
|
| T |
33332522 |
gcatggggtttgtaaaatttcgcatggtgcattgattac |
33332560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 14738918 - 14739149
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
14738918 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga |
14739017 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
14739018 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
14739117 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
14739118 |
gcatcggtagctagtgttgcatctcataataa |
14739149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 29485328 - 29485190
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | ||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
29485328 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttaatagtctaggttattgcactagaattga |
29485229 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattac |
164 |
Q |
| |
|
||||||| | ||| |||||||| | |||||||| ||||| |
|
|
| T |
29485228 |
gcatgaggtttgtaaaatttcgcagggtgcattgattac |
29485190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 24077619 - 24077553
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgtaaattt |
145 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||| |||| ||||||| | ||||||||| |
|
|
| T |
24077619 |
aatttccataagcatgtttgatagtctaggttattgtactaggattgagcatgaggtttgtaaattt |
24077553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 9225750 - 9225981
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || ||| ||||||| | ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
9225750 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccctaagcatgtttgataatctaggttattgcactagaataga |
9225849 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| |||| | | || ||| || |||||||||||||||||||| | ||||||| | || |
|
|
| T |
9225850 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctagaatgaatggtttatacattttagatggttccatagtaattggtaat |
9225949 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
9225950 |
gcatcggtagctagtgttgcatctcataataa |
9225981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 16625391 - 16625477
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgtaaa-tttcgaatggtgcattaattac |
164 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||||||| ||||| |
|
|
| T |
16625391 |
aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgaggtttgtaaagtttcgcatggtgcattgattac |
16625477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 5146602 - 5146541
Alignment:
| Q |
70 |
gcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatg |
131 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
5146602 |
gcaaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatg |
5146541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 18860350 - 18860282
Alignment:
| Q |
189 |
tttatacattttagatggttttactgtaattgatcatgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
|||||||||||||||||||| | ||||||| | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
18860350 |
tttatacattttagatggttccatagtaattggtaatgcatcggtagctagtgttgcatctcataataa |
18860282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 1247 - 1067
Alignment:
| Q |
28 |
tgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgtg |
127 |
Q |
| |
|
|||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
1247 |
tgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgag |
1148 |
T |
|
| Q |
128 |
catgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
|||| | | ||| |||||||| |||||||||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| |
|
|
| T |
1147 |
catgcggt-tgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatggtttatacattttagatggtt |
1067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 9352 - 9223
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgtttt |
177 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||| | | ||| |||||||| |||||||||| ||||| ||||| | | | |
|
|
| T |
9352 |
aatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgcggt-tgtaaaatttcgcatggtgcattgattacggttaaagggtct |
9254 |
T |
|
| Q |
178 |
aagatgtttgatttatacattttagatggtt |
208 |
Q |
| |
|
|| ||| || |||||||||||||||||||| |
|
|
| T |
9253 |
aaaatgaatggtttatacattttagatggtt |
9223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 9025143 - 9025375
Alignment:
| Q |
26 |
tgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattg |
125 |
Q |
| |
|
|||||||||||| ||||| ||||| | | || ||| |||| ||||| |||| ||||||| | | ||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
9025143 |
tgtgaattccttctaaggtatgtgaggtttgttcccgaacttatgcgaaatttaatttccctaaacatgtttgatagtctagattattgcattagaattg |
9025242 |
T |
|
| Q |
126 |
tgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatca |
224 |
Q |
| |
|
||| | | | | |||||||| ||||||| ||||||||||||||| | | ||| ||| || |||||||||||||||||||| || ||||||| | | |
|
|
| T |
9025243 |
aatatggggtttatgaaatttcgcatggtgctttaattactcttaaagggtctaaaatgaatggtttatacattttagatggttctatagtaattggtaa |
9025342 |
T |
|
| Q |
225 |
tgtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
||||||| |||||||| || | |||||||||| |
|
|
| T |
9025343 |
tgtatcggcagctagtgtagtacctcataataa |
9025375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 41396980 - 41396749
Alignment:
| Q |
27 |
gtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgcactaaaattgt |
126 |
Q |
| |
|
||||||||||||||||| ||||| | | || ||| |||| || || |||| ||||||||| ||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
41396980 |
gtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccataagcatgtttgacaatctaggttattgcactagaataga |
41396881 |
T |
|
| Q |
127 |
gcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgtaattgatcat |
225 |
Q |
| |
|
||||| | | ||| |||||||| |||||||||| ||||| | || | | || ||| | |||||||||||||||||||| | ||||||| | || |
|
|
| T |
41396880 |
gcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaacggtttatacattttagatggttccatagtaattggtaat |
41396781 |
T |
|
| Q |
226 |
gtatcgttagctagtgaagcatctcataataa |
257 |
Q |
| |
|
| |||| ||||||||| |||||||||||||| |
|
|
| T |
41396780 |
gcatcgatagctagtgttgcatctcataataa |
41396749 |
T |
|
Back To:
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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 47100154 - 47100379
Alignment:
| Q |
17 |
tttgatcactgtgaattccttttaaggcatgtgtgatatgatcctgaacctatgcaaaatgcaatttccattagcatgtttgataatctaggttattgca |
116 |
Q |
| |
|
|||||| || |||||||||| |||| | ||||| | | || ||| |||| || || |||| ||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
47100154 |
tttgatgaccgtgaattcctattaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgca |
47100253 |
T |
|
| Q |
117 |
ctaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattactcttaaatgttttaagatgtttgatttatacattttagatggttttactgt |
215 |
Q |
| |
|
||| ||||| ||||| | | ||| |||||||| |||||| ||| ||||| ||||| | | ||| ||| || |||||||||||||||||||| | || |
|
|
| T |
47100254 |
ctagaattgagcatggggtttgtaaaatttcgcatggtgtattgattacgattaaagggtctaaaatgaatggtttatacattttagatggttccatagt |
47100353 |
T |
|
| Q |
216 |
aattgatcatgtatcgttagctagtg |
241 |
Q |
| |
|
||||| | ||| |||| ||||||||| |
|
|
| T |
47100354 |
aattggtaatgcatcggtagctagtg |
47100379 |
T |
|
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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 35699 - 35613
Alignment:
| Q |
79 |
aatttccattagcatgtttgataatctaggttattgcactaaaattgtgcatgagatgtgt-aaatttcgaatggtgcattaattac |
164 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||| ||||| ||||| | | ||| |||||| | |||||||||||||||| |
|
|
| T |
35699 |
aatttccagaagcatgttttataggctaggttattgcactataattgagcatggggtttgtaaaattttgcatggtgcattaattac |
35613 |
T |
|
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