View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_88 (Length: 255)
Name: NF16735_low_88
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 36074783 - 36075003
Alignment:
| Q |
29 |
aaaatatatataattgattgttctagttaggaatactgcatgagaaattcttgattggggcgcaccca----tctttcatattgcaactcactattaagt |
124 |
Q |
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| T |
36074783 |
aaaatatatataattgattgttctagttaagaatactgcatgagaaattcttgattggggcgcacccaagaatctttcatattgcaactcactattaagt |
36074882 |
T |
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| Q |
125 |
gataacctaataaataaatattcaaatcaactattaacataaacatcaatcttcattaaaatctggacctccattgcacttagctgaggaacctaaatct |
224 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36074883 |
gataacctaacaaataaatattcaaattaactattaacataaacatcaatcttcattaaaatctggacctccattgcacttagctgaggaacctaaatct |
36074982 |
T |
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| Q |
225 |
tctatagcatctaaacctatg |
245 |
Q |
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||||||||||||||||||||| |
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| T |
36074983 |
tctatagcatctaaacctatg |
36075003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 36146170 - 36146281
Alignment:
| Q |
25 |
cttaaaaatatatataattgattgttctagttaggaatactgcatgagaaattcttgattg-gggcgcaccc----atctttcatattgc---aactcac |
116 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||| ||||||| |
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| T |
36146170 |
cttagaaatatatataatttattgttctagttaggaatactgcatgagaaattcttgattgagcgagcacccaagaatctttcatattgcacaaactcac |
36146269 |
T |
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| Q |
117 |
tattaagtgata |
128 |
Q |
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|||||||||||| |
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| T |
36146270 |
tattaagtgata |
36146281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 26530888 - 26530781
Alignment:
| Q |
96 |
atctttcatattgca---actcactattaagtgataacctaataaataaatattcaaatcaactattaacataaacatcaatcttcattaaaatctggac |
192 |
Q |
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||||||||||||||| ||||||||||||||||||| | || ||||||||| ||||||||| | |||||||||||||||||||| || ||||| || |
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| T |
26530888 |
atctttcatattgcataaactcactattaagtgataagcaaacaaataaatacccaaatcaaccactaacataaacatcaatcttcggtagaatctacac |
26530789 |
T |
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| Q |
193 |
ctccattg |
200 |
Q |
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|||||||| |
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| T |
26530788 |
ctccattg |
26530781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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