View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_89 (Length: 251)
Name: NF16735_low_89
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_89 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 37179513 - 37179277
Alignment:
| Q |
13 |
tgaacgttgaggggatgataccaatttcaaagtagagaagaacttaggacttaaagaacacttacaaaattatttatatttatcttttttcaaagatatt |
112 |
Q |
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| T |
37179513 |
tgaacgttgaggggatgataccaattttaaagtagggaagaacttaggacttaaagaacacttataaaattatttatatttatctttcttcaaagatatt |
37179414 |
T |
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| Q |
113 |
agtagagcttgaacccctttcacgtagatgcaaacaattaaaacttgcagaatataacaacaaacaatgcatacagccagaattaatcctaatttctata |
212 |
Q |
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| T |
37179413 |
agtagagcttgaacccctttcagataaatgcaaacaattaaaacttgcagaatataacaacaaacaatgtatacagcc--aattaatcctaatttctata |
37179316 |
T |
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| Q |
213 |
cacactacatatctaatttaatacacacaaataaaaccc |
251 |
Q |
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| T |
37179315 |
cacactacatatctaatttaatacactcaaataaaaccc |
37179277 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 18553815 - 18553767
Alignment:
| Q |
65 |
aaagaacacttacaaaattatttatatttatcttttttcaaagatatta |
113 |
Q |
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| T |
18553815 |
aaagaacatttacaaaagtatttagatttaactttcttcaaagatatta |
18553767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 41275433 - 41275465
Alignment:
| Q |
65 |
aaagaacacttacaaaattatttatatttatct |
97 |
Q |
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| T |
41275433 |
aaagaacacttacaaaaatatttatatttatct |
41275465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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