View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_9 (Length: 569)

Name: NF16735_low_9
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_9
NF16735_low_9
[»] chr4 (5 HSPs)
chr4 (57-550)||(51387050-51387534)
chr4 (57-180)||(14527501-14527624)
chr4 (96-182)||(45393979-45394065)
chr4 (133-186)||(24666123-24666176)
chr4 (96-180)||(26354196-26354280)
[»] chr8 (4 HSPs)
chr8 (57-180)||(26847646-26847769)
chr8 (75-165)||(36182064-36182154)
chr8 (65-124)||(42663931-42663990)
chr8 (99-180)||(4402254-4402335)
[»] chr5 (6 HSPs)
chr5 (57-178)||(23257894-23258013)
chr5 (76-182)||(39937851-39937956)
chr5 (131-178)||(16194354-16194401)
chr5 (64-114)||(24566131-24566181)
chr5 (64-114)||(24607167-24607217)
chr5 (76-124)||(23925722-23925770)
[»] chr7 (7 HSPs)
chr7 (64-167)||(36611670-36611773)
chr7 (75-189)||(17114136-17114250)
chr7 (75-167)||(17114789-17114881)
chr7 (96-180)||(30581230-30581314)
chr7 (96-159)||(43659760-43659823)
chr7 (76-150)||(48135927-48136000)
chr7 (104-180)||(34808961-34809037)
[»] chr1 (4 HSPs)
chr1 (66-184)||(27746093-27746210)
chr1 (65-180)||(2261477-2261591)
chr1 (64-120)||(28924644-28924700)
chr1 (104-178)||(1099893-1099967)
[»] chr2 (2 HSPs)
chr2 (96-180)||(20606885-20606969)
chr2 (75-151)||(18544142-18544217)
[»] chr3 (3 HSPs)
chr3 (65-167)||(9830585-9830686)
chr3 (65-180)||(15288221-15288335)
chr3 (132-180)||(53242666-53242714)
[»] chr6 (1 HSPs)
chr6 (64-109)||(16718336-16718381)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 57 - 550
Target Start/End: Original strand, 51387050 - 51387534
Alignment:
Q  57 tgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||    
T  51387050 tgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgacttttaattattattcgtagtggttcaccggtgagggacgtaat 51387149  T
Q  157 tgatccctcactctataatccaccattatttataatttttattgataaatatgtccttttgatatccattttatcacttctctataatctgttatgaaaa 256  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51387150 tgatccctcaccctataatccaccattatttataatttttactgataaatatgtccttttgatatccattttatcacttctctatagtctgttatgaaaa 51387249  T
Q  257 tgattggattggtgcacatttaaaaagattgcggaacataagtatattgtacacaaagtaacaagtatcattgagatgtactatcgatgcannnnnnnnn 356  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||             
T  51387250 tgattggattggtgcacatttaaaaagattgtggaacataggtatattgtacacaaggtaacaagtatcattgagatgtactatcgatgca----ttttt 51387345  T
Q  357 nnnnngtaagttgtaacagtgtcattgattttccccctnnnnnnnncactatctttgatttttatattagcatgaaatgaaatgagaactcacatcaaaa 456  Q
         |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||     ||||||||||||||||||||||||    
T  51387346 tttttgtaagttgtaacagtgtcattgattttccccctaaaaaaaacactttctttgatttttatattagc-----atgaaatgagaactcacatcaaaa 51387440  T
Q  457 aatataaaatcannnnnnnnncattcaatttagttttgatatatcaaagaataattacattttaaaaataacttttttgatgtcaagttcaaat 550  Q
    ||||||||||||         |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51387441 aatataaaatcatttttttttcattgaatttagttttgatatatcaaagaataattacattttgaaaataacttttttgatgtcaagttcaaat 51387534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 14527501 - 14527624
Alignment:
Q  57 tgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaat 156  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  14527501 tgcaatatagtgtatatggtgtataataagatatatgtacttgattaatctaatgactcttaattattattcatagtggttcaccggtgagggacttaat 14527600  T
Q  157 tgatccctcactctataatccacc 180  Q
    ||||||||||| ||| ||||||||    
T  14527601 tgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 45394065 - 45393979
Alignment:
Q  96 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccaccat 182  Q
    ||||||| |||||||| |||| ||||||| || ||||||||||| || | || ||| ||||||| ||||||||||| ||| ||||||    
T  45394065 cttgattgatctaatggctctcaattattgttaatagtggttcaccggtaagagacttaattgaaccctcactctagaattcaccat 45393979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 24666176 - 24666123
Alignment:
Q  133 tggttcatcgatgagggacgtaattgatccctcactctataatccaccattatt 186  Q
    ||||||| || |||||||| ||||||||||||||| ||| ||||||||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccattatt 24666123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 26354196 - 26354280
Alignment:
Q  96 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    |||||||||| |||||||||||||| ||| ||||| ||||| || |  |||||||| ||||||| ||||||| ||| || |||||    
T  26354196 cttgattaatttaatgactcttaataattgttcatggtggtccacctgtgagggacttaattgaaccctcaccctagaacccacc 26354280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 26847646 - 26847769
Alignment:
Q  57 tgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaat 156  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||    
T  26847646 tgcaatatagtgtatatggtatataataagctatgtgtacttgattaatctaatgactcttaattattattcatagtggttcaccggtgaggaacttaat 26847745  T
Q  157 tgatccctcactctataatccacc 180  Q
    ||||||||||  ||| ||||||||    
T  26847746 tgatccctcatcctagaatccacc 26847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 36182064 - 36182154
Alignment:
Q  75 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctc 165  Q
    |||||||||||| | ||||  ||||||||||||||||||||| | | ||| || || |||||||| || |||||||| ||||||| |||||    
T  36182064 gtgtataataaggtgtgtgatcttgattaatctaatgactctcagtaattgtttatggtggttcaccggtgagggacttaattgaaccctc 36182154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 42663931 - 42663990
Alignment:
Q  65 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattatt 124  Q
    ||||||||  |||||||||||||  | |||| |||||||||| |||||||||||||||||    
T  42663931 agtgtatacagtgtataataagaattatgtatttgattaatcaaatgactcttaattatt 42663990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 4402254 - 4402335
Alignment:
Q  99 gattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    ||||||||||||| |||||  || || |||| ||||||||| || |||||||| |||| || ||||||| ||| ||||||||    
T  4402254 gattaatctaatggctcttgtttgttgttcaaagtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 23257894 - 23258013
Alignment:
Q  57 tgcaatatagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaat 156  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||| |  |||| ||  ||||    
T  23257894 tgcaatatagtgtatatcgtgtataataagatatgtgtacttgattaatctaatgacttttaattattattcaca--ggttcaccagtgagagatttaat 23257991  T
Q  157 tgatccctcactctataatcca 178  Q
    ||||||||||| ||| ||||||    
T  23257992 tgatccctcaccctaaaatcca 23258013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 39937851 - 39937956
Alignment:
Q  76 tgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataat 175  Q
    ||||||||||||||| || | ||  ||||||||||| ||||| ||| |||||||| ||||| || || |||||||| ||| ||| ||||||| ||| |||    
T  39937851 tgtataataagatatatgaatttagttaatctaatggctctt-attgttattcatggtggtccaccggtgagggacttaactgaaccctcaccctagaat 39937949  T
Q  176 ccaccat 182  Q
    |||||||    
T  39937950 ccaccat 39937956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 16194401 - 16194354
Alignment:
Q  131 agtggttcatcgatgagggacgtaattgatccctcactctataatcca 178  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  16194401 agtggttcactgatgatggacttaattgatccctcactctataatcca 16194354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 24566131 - 24566181
Alignment:
Q  64 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgact 114  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  24566131 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgact 24566181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 24607167 - 24607217
Alignment:
Q  64 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgact 114  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  24607167 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgact 24607217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 23925770 - 23925722
Alignment:
Q  76 tgtataataagatatgtgtacttgattaatctaatgactcttaattatt 124  Q
    |||||||||| || |||||  || |||||||||||||||||||||||||    
T  23925770 tgtataataaaatttgtgtttttaattaatctaatgactcttaattatt 23925722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 36611670 - 36611773
Alignment:
Q  64 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccc 163  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||||||| || |||||||| || || | |||||||||  |||||||||| ||||||| |||    
T  36611670 tagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggacttaattgaaccc 36611769  T
Q  164 tcac 167  Q
    ||||    
T  36611770 tcac 36611773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 17114250 - 17114136
Alignment:
Q  75 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataa 174  Q
    |||||||||||| | |||   ||||||||||||||||| | | | | ||| ||||| ||| |||| ||||||||||| ||||||| ||||||| ||| ||    
T  17114250 gtgtataataaggtgtgtaatcttgattaatctaatgattatcagtaattgttcatggtgattcaccgatgagggacttaattgaaccctcaccctagaa 17114151  T
Q  175 tccaccattatttat 189  Q
    ||||||||| |||||    
T  17114150 tccaccattttttat 17114136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 17114789 - 17114881
Alignment:
Q  75 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcac 167  Q
    |||||||||||| | ||||  ||||||||||||||||||||| | | ||| ||||| |||||||| || ||||| || ||||||| |||||||    
T  17114789 gtgtataataagttgtgtgatcttgattaatctaatgactctcagtaattgttcatggtggttcaccggtgaggaacttaattgaaccctcac 17114881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 30581230 - 30581314
Alignment:
Q  96 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    ||||||| |||||||| |||||||||||| || |||||||||||  | |||||||| ||||||| ||||||| ||| ||| ||||    
T  30581230 cttgattgatctaatggctcttaattattgtttatagtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 43659823 - 43659760
Alignment:
Q  96 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattga 159  Q
    ||||||| ||||||| ||||||||||||  || || ||||||||||||||| |||| |||||||    
T  43659823 cttgattgatctaataactcttaattatagtttatggtggttcatcgatgatggacttaattga 43659760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 48136000 - 48135927
Alignment:
Q  76 tgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgaggga 150  Q
    |||| |||| |||||||| |||||||||||||||||| |||||||| || || |||||| | ||||| |||||||    
T  48136000 tgtagaataggatatgtggacttgattaatctaatga-tcttaattgttgtttatagtgatgcatcggtgaggga 48135927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 34808961 - 34809037
Alignment:
Q  104 atctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    |||||||||||  |||||||  || | |||||| || |||||| |||| ||||||| ||||||||||| ||||||||    
T  34808961 atctaatgactaataattatcttttaaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 27746093 - 27746210
Alignment:
Q  66 gtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctc 165  Q
    ||||||||||||||||||||||||| || |||  |||||||||||| ||||| ||| |||||||  ||| | ||  | |||||||| ||||||| |||||    
T  27746093 gtgtatatggtgtataataagatatatgaactcaattaatctaatggctctt-attgttattcacggtgatccactggtgagggacttaattgaaccctc 27746191  T
Q  166 actctataatccaccatta 184  Q
    || ||| ||||||||||||    
T  27746192 acgctagaatccaccatta 27746210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 2261477 - 2261591
Alignment:
Q  65 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 164  Q
    |||||||||| | ||||||||||||| || |||  |||||||||||| ||||| ||| |||||||| ||||||||  | |||||| | ||||||| ||||    
T  2261477 agtgtatatgatatataataagatatatgaactcaattaatctaatggctctt-attgttattcatggtggttcactggtgaggggcttaattgaaccct 2261575  T
Q  165 cactctataatccacc 180  Q
    ||| ||| ||| ||||    
T  2261576 caccctaaaattcacc 2261591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 28924700 - 28924644
Alignment:
Q  64 tagtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaat 120  Q
    |||||||| || | ||||||||||||||||   ||||||||||||||||||||||||    
T  28924700 tagtgtatgtgatttataataagatatgtgagtttgattaatctaatgactcttaat 28924644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 1099967 - 1099893
Alignment:
Q  104 atctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatcca 178  Q
    |||||||| |||| ||| |||||||| |||||||||||| |||||||| |||| || | ||||| ||| ||||||    
T  1099967 atctaatggctctcaataattattcagagtggttcatcggtgagggacttaatagaactctcaccctagaatcca 1099893  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 20606885 - 20606969
Alignment:
Q  96 cttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    ||||||| |||||||| |||||||||||| || ||||||||||| || |||||||| ||||||| ||||||| ||| ||| ||||    
T  20606885 cttgattgatctaatggctcttaattattgtttatagtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 18544142 - 18544217
Alignment:
Q  75 gtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggac 151  Q
    |||||||||||||||| || |||  |||||||||||  ||||||||| |||||||| ||||| || || ||||||||    
T  18544142 gtgtataataagatatatgaactcaattaatctaatagctcttaatt-ttattcatggtggtccaccggtgagggac 18544217  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 9830686 - 9830585
Alignment:
Q  65 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 164  Q
    ||||||||  |||||||||||||  |||||| |||||||||| ||||||||||||||||| || | | |||| || || |||||||| ||||||| ||||    
T  9830686 agtgtatacagtgtataataagaattgtgtatttgattaatcaaatgactcttaattattgttaaga-tggtccaccggtgagggacttaattgaaccct 9830588  T
Q  165 cac 167  Q
    |||    
T  9830587 cac 9830585  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 15288221 - 15288335
Alignment:
Q  65 agtgtatatggtgtataataagatatgtgtacttgattaatctaatgactcttaattattattcatagtggttcatcgatgagggacgtaattgatccct 164  Q
    ||||||||  |||||||||||||  |||||| |||||||||| ||||||||||||||||  || | | |||||||||| ||||| || |||||||  |||    
T  15288221 agtgtatacagtgtataataagaattgtgtatttgattaatcaaatgactcttaattatagttaaga-tggttcatcggtgaggaacttaattgaatcct 15288319  T
Q  165 cactctataatccacc 180  Q
    ||| ||| ||| ||||    
T  15288320 caccctagaattcacc 15288335  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 53242714 - 53242666
Alignment:
Q  132 gtggttcatcgatgagggacgtaattgatccctcactctataatccacc 180  Q
    ||||| || ||||||||||| |||||||| |||||| ||||||||||||    
T  53242714 gtggtccaccgatgagggacttaattgattcctcaccctataatccacc 53242666  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 16718381 - 16718336
Alignment:
Q  64 tagtgtatatggtgtataataagatatgtgtacttgattaatctaa 109  Q
    ||||| ||| |||||||||||| |||||||| ||||||||||||||    
T  16718381 tagtgcataaggtgtataataaaatatgtgtgcttgattaatctaa 16718336  T

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