View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_90 (Length: 251)
Name: NF16735_low_90
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 55983218 - 55983376
Alignment:
| Q |
70 |
cagccatgttaacgttttcccaaaagcagctcaacagtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatgcataagcgatc |
169 |
Q |
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| T |
55983218 |
cagccatgttaacgttttcccaaaagcagctcaacagtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatacataagcgatc |
55983317 |
T |
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| Q |
170 |
aacgatgtagaacctgttacgtgt-----aagggaattagaggcacacacgtggattgc |
223 |
Q |
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| T |
55983318 |
aacgatgtagaacctgttacgtgtaagggaagggaattagaggcacacacgtggattgc |
55983376 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 6298152 - 6298369
Alignment:
| Q |
5 |
ttttctccaacaaacttggtctcaaacataaggaagcaacagggcatgctctctttggaaatacacagccatgttaacgttttcccaaaagcagctcaac |
104 |
Q |
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| T |
6298152 |
ttttctccaacaagattaatctcaaatttaaggaagcaacagggcaagcttgctttctaaacacacaaccatgataacatttctctggaagcagctcaac |
6298251 |
T |
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| Q |
105 |
agtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatgcataagcgatcaacgatgtagaacctgttacgtgtaagggaattag |
204 |
Q |
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| T |
6298252 |
agcgtcctcggaaatcaatgcagttcctattt-gtacataaggattccgagctacataagcgatcaacgatgcagaacctataatgcgtatgggaattag |
6298350 |
T |
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| Q |
205 |
aggcacacacgtggattgc |
223 |
Q |
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| T |
6298351 |
aggcacacacatggattgc |
6298369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 6314786 - 6314839
Alignment:
| Q |
135 |
tttgtgcataaggattcagagatgcataagcgatcaacgatgtagaacctgtta |
188 |
Q |
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| T |
6314786 |
tttgtgcataaggattccgagccacataagcgatcaacgattcagaacctgtta |
6314839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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