View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_92 (Length: 249)
Name: NF16735_low_92
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 14391966 - 14391741
Alignment:
| Q |
16 |
agtgacaaaatttaagattcaaatcctcattgccctctatgtgactcatgtcattgatgaagagggagttgttgtttattttttacttaatccatctctt |
115 |
Q |
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| T |
14391966 |
agtgacaaaatttaagattcaaaacctcatttccctctatgtgactcatgtcattgatgaagagggagttattgtttatttttgacttaatccatctctt |
14391867 |
T |
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| Q |
116 |
caatcctcaacaaccctatctctaccacatatcaaagtccaaagatacattttctatactcacaaatcagaagaaannnnnnncaaatttctatcaagcc |
215 |
Q |
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| T |
14391866 |
caatcctcgacaaccctatctctaccacatatcaaagtccaaatatacattttctattcccacaaatctgaagaaaaaaatttcaaatttctatcaagcc |
14391767 |
T |
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| Q |
216 |
aattttatatttgataaaacagcatg |
241 |
Q |
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| T |
14391766 |
aattttatatttgataaaatagcatg |
14391741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 14392078 - 14392044
Alignment:
| Q |
71 |
gatgaagagggagttgttgtttattttttacttaa |
105 |
Q |
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| T |
14392078 |
gatgaagagggagttgttgtttatttttgacttaa |
14392044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 7821357 - 7821131
Alignment:
| Q |
10 |
cacagaagtgacaaaatttaa--gattcaaatcctcattgccctctatgtgactcatgtcattgatgaagagggagttgttgtttattttttacttaatc |
107 |
Q |
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|||| ||||||||||| |||| |||| |||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
7821357 |
cacaaaagtgacaaaacttaaaagatttaaatcctcattgtcctctatgtgtatcatgtcattcatgaagagggtgttgttgtttattttttactcaatc |
7821258 |
T |
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| Q |
108 |
catctcttcaatcc-tcaacaaccctatctctaccacatatcaaagtccaaagatacattttctatactcacaaatcagaagaaannnnnnncaaatttc |
206 |
Q |
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| T |
7821257 |
catctcatcaatccttcggcaaccctatctctaccacatat-------caaagctacattttctatacttacaaatctg-agaaaaaaatttcaaatttc |
7821166 |
T |
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| Q |
207 |
tatcaagccaattttatatttgataaaacagcatg |
241 |
Q |
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||||||| ||||||| ||| |||||||| |||||| |
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| T |
7821165 |
tatcaagacaattttctatctgataaaatagcatg |
7821131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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