View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16735_low_93 (Length: 249)

Name: NF16735_low_93
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16735_low_93
NF16735_low_93
[»] chr2 (19 HSPs)
chr2 (1-242)||(30185653-30185894)
chr2 (1-235)||(30056323-30056557)
chr2 (1-227)||(30120112-30120338)
chr2 (1-227)||(30134810-30135036)
chr2 (1-89)||(30021853-30021941)
chr2 (1-89)||(30038754-30038842)
chr2 (1-89)||(30080259-30080347)
chr2 (1-89)||(30108232-30108320)
chr2 (1-89)||(30232892-30232980)
chr2 (31-236)||(30789157-30789362)
chr2 (28-237)||(30067096-30067305)
chr2 (1-242)||(30250783-30251024)
chr2 (1-107)||(30170058-30170164)
chr2 (28-220)||(30028487-30028679)
chr2 (28-220)||(30222625-30222817)
chr2 (28-178)||(30113021-30113171)
chr2 (28-133)||(30091168-30091273)
chr2 (28-133)||(30101486-30101591)
chr2 (28-133)||(30127773-30127878)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 30185894 - 30185653
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  30185894 aagtaaaacaatggccagggatggatgagcttcgaaaatgccatcagatcatcttgccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 30185795  T
Q  101 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  30185794 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgggatgagagagttaaaagtcgttagtttattt 30185695  T
Q  201 ggaatgatgtttaccccttctctaccatcatctcttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30185694 ggaatgatgtttaccccttctctaccatcatctcttcatctc 30185653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30056323 - 30056557
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30056323 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttacttggtcttatatttacaagcttcctgagaagctggtgtgtcc 30056422  T
Q  101 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgt 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||| ||||| |||| |||| ||||||||||||| |    
T  30056423 aaagttggagctacttcaacttgaaaatataggtgataatttggaagtccccgatgacttcttctctgggatgatagagctaaaggtcgttagtttatat 30056522  T
Q  201 ggaatgatgtttaccccttctctaccatcatctct 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  30056523 ggaatgatgtttgccccttctctaccatcatctct 30056557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30120338 - 30120112
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||    
T  30120338 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagttgaagtgccc 30120239  T
Q  101 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgt 200  Q
    | ||||| ||||||| || ||| | |||||||| ||||||||| |||||||| | ||||| ||||||| ||||| |||| |||| ||| ||||||||| |    
T  30120238 agagttgaagctactgcagcttcagaatataggagattatttgaaagtccccgatgacttcttctctgggatgatagagctaaaggtcattagtttatat 30120139  T
Q  201 ggaatgatgtttaccccttctctacca 227  Q
    |||||||||||| |||| |||| ||||    
T  30120138 ggaatgatgtttgccccgtctccacca 30120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30135036 - 30134810
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||| ||    
T  30135036 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttttatttacaagcttcctgagaagttgaagtgccc 30134937  T
Q  101 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgt 200  Q
    | ||||| ||||||| || ||| | |||||||| ||||||||| |||||||| | ||||| ||||||| ||||| |||| |||| ||| ||||||||| |    
T  30134936 agagttgaagctactgcagcttcagaatataggagattatttgaaagtccccgatgacttcttctctgggatgatagagctaaaggtcattagtttatat 30134837  T
Q  201 ggaatgatgtttaccccttctctacca 227  Q
    |||||||||||| |||| |||| ||||    
T  30134836 ggaatgatgtttgccccgtctccacca 30134810  T

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Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30021853 - 30021941
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 89  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30021853 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 30021941  T

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Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30038842 - 30038754
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 89  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30038842 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 30038754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30080259 - 30080347
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 89  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30080259 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 30080347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30108320 - 30108232
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 89  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30108320 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 30108232  T

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Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30232980 - 30232892
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 89  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30232980 aagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaag 30232892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 30789157 - 30789362
Alignment:
Q  31 ttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaatat 130  Q
    |||||||||| ||||| ||||| || ||||||||| |||||||||| |||||||||||||||| ||| ||| || || || |||||| |||| |||||||    
T  30789157 ttcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatat 30789256  T
Q  131 aggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgtggaatgatgtttaccccttctctaccatca 230  Q
    ||||||||||||| |||||||  | ||||| ||||| | |||||||||| |||| || |||| ||||| |||||||||| ||||||||| || ||||  |    
T  30789257 aggtgattatttgaaagtccctgatgacttcttctccgggatgagagagctaaaggttgttaatttatatggaatgatgcttaccccttttccaccaaaa 30789356  T
Q  231 tctctt 236  Q
    ||||||    
T  30789357 tctctt 30789362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 30067096 - 30067305
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||| |||||||||||||||||||  || | |||||||||||||||||| |||||||||||| ||| ||| ||| |||||   ||||||  |||||||||    
T  30067096 agctccaaaaatgccatcagatcagtctgcattggtcttatatttacaatcttcctgagaagatggagtgcccagagttgactctacttatacttgaaaa 30067195  T
Q  128 tataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgtggaatgatgtttaccccttctctacca 227  Q
    ||||||||| |||||  || || || | ||||| ||||||| |||||||||| ||   ||||||||||||| ||||||||||||| | ||||||| ||||    
T  30067196 tataggtgagtatttaaaaatctccgatgacttcttctctgggatgagagagctatcggtcgttagtttatatggaatgatgtttgctccttctccacca 30067295  T
Q  228 tcatctcttc 237  Q
     |||||||||    
T  30067296 ccatctcttc 30067305  T

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Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30250783 - 30251024
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    ||||||| |||||||| | ||||||| | ||   ||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||| ||| ||    
T  30250783 aagtaaaacaatggccagagatggatcaactaagaaaatgccatcagataatcattccttggtcatatatttacaagcttcctgaaaagctggagtgccc 30250882  T
Q  101 aaagttggagctacttcaacttgaaaatataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgt 200  Q
    | || |  ||||||| | |||| | ||||||| ||| | |||| |||||||  | ||||| ||||| | |||||||||| |||| ||| ||| ||||| |    
T  30250883 agagctaaagctactactacttcataatatagatgactttttgaaagtccctgatgacttcttctccgggatgagagagctaaaggtcattaatttatat 30250982  T
Q  201 ggaatgatgtttaccccttctctaccatcatctcttcatctc 242  Q
    ||||||||  |||||||||||| |||| |||||||| |||||    
T  30250983 ggaatgatacttaccccttctccaccaccatctctttatctc 30251024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30170058 - 30170164
Alignment:
Q  1 aagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtcc 100  Q
    ||||||| |||||||| | ||| ||  ||||||||||||||||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||||||    
T  30170058 aagtaaaacaatggccagagatagaccagcttcaaaaatgccatcaaatcattttcccttggtcttatattgaagagcttcctgagaagttggagtgtcc 30170157  T
Q  101 aaagttg 107  Q
    | |||||    
T  30170158 agagttg 30170164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 30028487 - 30028679
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30028487 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30028586  T
Q  128 tataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgtggaatgatgtttaccccttc 220  Q
    |||||| ||  ||||| ||||| |  | || || ||||||| |||||||||  |||||||  |   ||| | |||||||||||| ||||||||    
T  30028587 tataggcgacaatttgaaagtctctgatgagtttttctctgggatgagagaagtaaaagttctagatttgtatggaatgatgttaaccccttc 30028679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 30222625 - 30222817
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30222625 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30222724  T
Q  128 tataggtgattatttggaagtccccaacgacttattctctgagatgagagagttaaaagtcgttagtttatgtggaatgatgtttaccccttc 220  Q
    |||||| ||  ||||| ||||| |  | || || ||||||| |||||||||  |||||||  |   ||| | |||||||||||| ||||||||    
T  30222725 tataggcgacaatttgaaagtctctgatgagtttttctctgggatgagagaagtaaaagttctagatttgtatggaatgatgttaaccccttc 30222817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 30113021 - 30113171
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30113021 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30113120  T
Q  128 tataggtgattatttggaagtccccaacgacttattctctgagatgagaga 178  Q
    |||||| ||  ||||| ||||| |  | || || ||||||| |||||||||    
T  30113121 tataggcgacaatttgaaagtctctgatgagtttttctctgggatgagaga 30113171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 30091168 - 30091273
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30091168 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30091267  T
Q  128 tatagg 133  Q
    ||||||    
T  30091268 tatagg 30091273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 30101486 - 30101591
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30101486 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30101585  T
Q  128 tatagg 133  Q
    ||||||    
T  30101586 tatagg 30101591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 30127773 - 30127878
Alignment:
Q  28 agcttcaaaaatgccatcagatcatccttccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaa 127  Q
    |||||||||| | |||||| |||||  | ||||||||||||||| |  |||||||||||||| ||| ||| ||| |||||  |||||||| |||| | ||    
T  30127773 agcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagttgaggctacttctacttcataa 30127872  T
Q  128 tatagg 133  Q
    ||||||    
T  30127873 tatagg 30127878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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