View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16735_low_99 (Length: 244)
Name: NF16735_low_99
Description: NF16735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16735_low_99 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 33617500 - 33617728
Alignment:
| Q |
16 |
gcaactccaaccaatctgcatggattaatatatataattcaagttagttttgaaaaactaggcaccaatgctgttatacatatgtagctgattaaaatta |
115 |
Q |
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| T |
33617500 |
gcaactccaaccaatctgcatggattaatatatataattcaagttagttttgaaaaactaggcaccaatgctgttatacatatgtagctgattaaaatta |
33617599 |
T |
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| Q |
116 |
attaaaacatataccgggaaaatgtttattgaagaaaagcctcaacacgactgcaacgaaagcaaaccattttccaactcatcctctgcatataatataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| || |
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| T |
33617600 |
attaaaacatataccgggaaaatgtttattgaagaaaagcctcaacacgactgcaacgaaagcaaaccattttccaactcctcctctgaaaataataaaa |
33617699 |
T |
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| Q |
216 |
catttagacaaattttcagtgtagaactc |
244 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
33617700 |
aatttcgacaaattttcagtgtagaactc |
33617728 |
T |
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