View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_high_2 (Length: 644)
Name: NF16736_high_2
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 6646976 - 6646583
Alignment:
| Q |
18 |
attatcacacttagatctgaatataccatctattattgatgaaaatttctcatttctagctacatttcaagaataaacttattttctttcttgatacaag |
117 |
Q |
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| T |
6646976 |
attatcacacttagatctgaatatgccatctattattgatgaaaatttctcatttctagctacatttcaagaa---acttattttctttcttgatacaag |
6646880 |
T |
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| Q |
118 |
ccaactggtgaaggatatcagacatttgtttaagtatttcctacattgattttcacaccaaaaaacaaattgtttttctcaatgttcattgaaaatgaaa |
217 |
Q |
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| T |
6646879 |
ccaactggtgaaggatatcagacatttgtttaagtatttcctacattgattttcacaccaaaaaacaaattgtttttctcaatgttcattgaaaatgaaa |
6646780 |
T |
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| Q |
218 |
ccatatattggctttagttaaaagttttctaaatgtagatttaaatttcttacttttaaacatgacaagaacgtttctgtaaaagtaatttgttatcact |
317 |
Q |
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| T |
6646779 |
ccatatattggctttagttaaaagttttctaaatgtagatttaaatttcttacttttaaacatgacaagaacgtttctgtaaaagtaatttgttatcact |
6646680 |
T |
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| Q |
318 |
ttcttaggtcagaagcttgcatctagctgctctcaagcaaggaataagcttgtcaacatctattcaggtaatgtaccactttgtaaattaagtacaa |
414 |
Q |
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| T |
6646679 |
ttcttaggtcagaagcttgcatctagctgctctcaagcaaggaataagcttgtcaacatctattcaggtaatgtacaactttgtaaattaagtacaa |
6646583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 457 - 636
Target Start/End: Complemental strand, 6646541 - 6646362
Alignment:
| Q |
457 |
gtaggaaatgaaagaacaatagaattttttcttctatttgagtcatttctgttggttctactaattggacttgtaagattctgctgcacattttgggcca |
556 |
Q |
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| T |
6646541 |
gtaggaaatgaaaggacaatagaattttttcttctatttgagtcatttctgttggttctactaattggacttgtaagattctgctgcacattttgggcca |
6646442 |
T |
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| Q |
557 |
aaaggaaacttcaagatcaaggtcttggaagtttcctcgacaagcgagtaagtcaaaatctttctgtttctgttcatctc |
636 |
Q |
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| T |
6646441 |
aaaggaaacttcaagatcaaggtcttggaagtttcctcgacaagcgagtaagttaaaatctttctgtttctgttcttctc |
6646362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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